RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 HYKKA2RU49 373 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 SMAD9O15198 467 aaKnown RBP13.64□□□□□ -0.23
COL4A3-202ENST00000396578 OAZ2O95190 189 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 HLA-DPB1P04440 258 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 C16orf58Q96GQ5 468 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 CD180Q99467 661 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 ZNF649Q9BS31 505 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 CENPMQ9NSP4 180 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 TMEM9Q9P0T7 183 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 CDH10Q9Y6N8 788 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 CCL16O15467 120 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 TBX10O75333 385 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 ALG10BQ5I7T1 473 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 LRRN1Q6UXK5 716 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 THEM6Q8WUY1 208 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 UPF1Q92900 1129 aaKnown RBP eCLIP13.64□□□□□ -0.23
COL4A3-202ENST00000396578 FAM163AQ96GL9 167 aaPredicted RBP13.64□□□□□ -0.23
COL4A3-202ENST00000396578 DGAT2Q96PD7 388 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 NELFAQ9H3P2 528 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 HCN2Q9UL51 889 aa13.64□□□□□ -0.23
COL4A3-202ENST00000396578 TRBV23OR9-2A0A075B6M9 112 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 IMPDH1P20839 514 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 FOXM1Q08050 763 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 RBM23Q86U06 439 aaKnown RBP13.63□□□□□ -0.23
COL4A3-202ENST00000396578 DPEP2Q9H4A9 486 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 ZNF705EA8MWA4 302 aaPredicted RBP13.63□□□□□ -0.23
COL4A3-202ENST00000396578 SLITRK5O94991 958 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 GNG2P59768 71 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 RHDQ02161 417 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 ZNF45Q02386 682 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 SPATS1Q496A3 300 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 MSANTD3Q96H12 275 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 COL21A1Q96P44 957 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 INMTO95050 263 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 CYP3A5P20815 502 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 PTGIRP43119 386 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 HGSNATQ68CP4 663 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 BEND4Q6ZU67 534 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 GET4Q7L5D6 327 aaPredicted RBP13.63□□□□□ -0.23
COL4A3-202ENST00000396578 RHBDF1Q96CC6 855 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 ZNF641Q96N77 438 aaPredicted RBP13.63□□□□□ -0.23
COL4A3-202ENST00000396578 PKP4Q99569 1192 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 OXSMQ9NWU1 459 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 WASF3Q9UPY6 502 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 RNF6Q9Y252 685 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 DLG5Q8TDM6 1919 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 ADAMTS3O15072 1205 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 OR5T2Q8NGG2 359 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 OR52E4Q8NGH9 312 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 THRSPQ92748 146 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 BORCS8Q96FH0 119 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 EBF4Q9BQW3 602 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 ADM5C9JUS6 153 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 CCL22O00626 93 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 PLEKHN1Q494U1 663 aaPredicted RBP13.63□□□□□ -0.23
COL4A3-202ENST00000396578 NECAB3Q96P71 396 aaPredicted RBP13.63□□□□□ -0.23
COL4A3-202ENST00000396578 EPYCQ99645 322 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 PNO1Q9NRX1 252 aaKnown RBP13.63□□□□□ -0.23
COL4A3-202ENST00000396578 SLC7A8Q9UHI5 535 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 GLS2Q9UI32 602 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 LAMP5Q9UJQ1 280 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 PCDHGC4Q9Y5F7 938 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 NOX1Q9Y5S8 564 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 NPIPA5E9PKD4 350 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 GLUD2P49448 558 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 HDAC2Q92769 488 aaKnown RBP13.63□□□□□ -0.23
COL4A3-202ENST00000396578 AKTIPQ9H8T0 292 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 ACTR3BQ9P1U1 418 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 NPIPA1Q9UND3 350 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 CLCA3PQ9Y6N3 262 aa13.63□□□□□ -0.23
COL4A3-202ENST00000396578 RPS3P23396 243 aaKnown RBP eCLIP13.62□□□□□ -0.23
COL4A3-202ENST00000396578 FNTBP49356 437 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 AMZ2Q86W34 360 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 CANT1Q8WVQ1 401 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 TMEM184CQ9NVA4 438 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 TMED5Q9Y3A6 229 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 TIMM8BQ9Y5J9 83 aaPredicted RBP13.62□□□□□ -0.23
COL4A3-202ENST00000396578 GPC2Q8N158 579 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 LRRC57Q8N9N7 239 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 TRMT61BQ9BVS5 477 aaKnown RBP13.62□□□□□ -0.23
COL4A3-202ENST00000396578 RRAGCQ9HB90 399 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 TRIM64BA6NI03 449 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 TMEM150CB9EJG8 249 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 NT5C1B-RDH14C9J2C7 533 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 LRRN3E7EW58 273 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 H3BSA7 217 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 DLGAP1O14490 977 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 ZNF16P17020 682 aaPredicted RBP13.62□□□□□ -0.23
COL4A3-202ENST00000396578 UQCRC1P31930 480 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 BRCC3P46736 316 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 ZNF420Q8TAQ5 688 aaPredicted RBP13.62□□□□□ -0.23
COL4A3-202ENST00000396578 CDK15Q96Q40 435 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 ADAM7Q9H2U9 754 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 LRRN3Q9H3W5 708 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 B3GAT2Q9NPZ5 323 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 CNTN3Q9P232 1028 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 SNX10Q9Y5X0 201 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 ABCB7O75027 752 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 SPARCP09486 303 aa13.62□□□□□ -0.23
COL4A3-202ENST00000396578 TBRG1Q3YBR2 411 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms