RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 KIR2DL4Q99706 377 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 NDEL1Q9GZM8 345 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 SLC32A1Q9H598 525 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 ZDHHC6Q9H6R6 413 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 REEP1Q9H902 201 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 SEBOXQ9HB31 216 aaPredicted RBP-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 PCDH12Q9NPG4 1184 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 DDX4Q9NQI0 724 aaKnown RBP-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 ENTPD7Q9NQZ7 604 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 OLFML3Q9NRN5 406 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 NPAP1Q9NZP6 1156 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 ZNF629Q9UEG4 869 aaPredicted RBP-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 HACL1Q9UJ83 578 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 MTMR6Q9Y217 621 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 PPP2R2CQ9Y2T4 447 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 EID1Q9Y6B2 187 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 MICAL3Q7RTP6 2002 aa-1.07□□□□□ -2.58
RNU6-540P-201ENST00000384622 CCDC88CQ9P219 2028 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 ZNF541Q9H0D2 1346 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 DNAH14Q0VDD8 3507 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 ARHGEF40Q8TER5 1519 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 IGKV2-24A0A0C4DH68 120 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 A0A0G2JQZ4 141 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 A0A1B0GW55 424 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 A8MU76 341 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 KIF28PB7ZC32 967 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 TEX22C9J3V5 150 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 G3V2L1 256 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 STX16-NPEPL1H3BU86 382 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 ACKR2O00590 384 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 HS3ST1O14792 307 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 CTAGE5O15320 804 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 MAGEB2O15479 319 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 KLK10O43240 276 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 WDHD1O75717 1129 aaPredicted RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 DFFBO76075 338 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 SEMA3DO95025 777 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 DUX4L2P0CJ85 424 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 DUX4L3P0CJ86 424 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 DUX4L5P0CJ88 424 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 DUX4L6P0CJ89 424 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 DUX4L7P0CJ90 424 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 IRF1P10914 325 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 IFI30P13284 250 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 IL9P15248 144 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 FUT3P21217 361 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 GJC1P36383 396 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 LONP1P36776 959 aaKnown RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 MTNR1AP48039 350 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 TRPC1P48995 793 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 GSK3BP49841 420 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 MMP15P51511 669 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 CSNK2BP67870 215 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 AKAP17AQ02040 695 aaKnown RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 OVGP1Q12889 678 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 SLAQ13239 276 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 CYLC2Q14093 348 aaPredicted RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 FAM50AQ14320 339 aaKnown RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 IL13RA2Q14627 380 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 EFTUD2Q15029 972 aaKnown RBP eCLIP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 C10orf91Q5T1B1 145 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 ARL6IP4Q66PJ3 421 aaKnown RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 DUX4L9Q6RFH8 374 aaPredicted RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 TOGARAM2Q6ZUX3 1019 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 ERI1Q8IV48 349 aaKnown RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 ZNF695Q8IW36 515 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 ZNF683Q8IZ20 524 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 BEST3Q8N1M1 668 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 AFAP1L2Q8N4X5 818 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 C14orf178Q8N769 122 aaPredicted RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 PAF1Q8N7H5 531 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 NAT8LQ8N9F0 302 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 AVL9Q8NBF6 648 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 CCDC150Q8NCX0 1101 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 GMCL1P1Q8NEA9 526 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 OR52B6Q8NGF0 335 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 OR6T1Q8NGN1 323 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 PDCD6IPQ8WUM4 868 aaKnown RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 HGDQ93099 445 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 FAF2Q96CS3 445 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 MED8Q96G25 268 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 MXRA8Q9BRK3 442 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 ZNF649Q9BS31 505 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 MECRQ9BV79 373 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 MARCH7Q9H992 704 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 HPS4Q9NQG7 708 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 CA10Q9NS85 328 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 MIOSQ9NXC5 875 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 OR6C2Q9NZP2 312 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 DUX4Q9UBX2 424 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 NFU1Q9UMS0 254 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 PA2G4Q9UQ80 394 aaKnown RBP-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 CNPY2Q9Y2B0 182 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 CA5BQ9Y2D0 317 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 PTPRTO14522 1441 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 CDH23Q9H251 3354 aa-1.08□□□□□ -2.58
RNU6-540P-201ENST00000384622 COL4A2P08572 1712 aa-1.09□□□□□ -2.58
RNU6-540P-201ENST00000384622 DNAH11Q96DT5 4516 aa-1.09□□□□□ -2.58
RNU6-540P-201ENST00000384622 TRAV9-2A0A087WT02 112 aa-1.09□□□□□ -2.58
RNU6-540P-201ENST00000384622 TRBV6-6A0A0A6YYG2 114 aa-1.09□□□□□ -2.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms