RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 YBX3P16989 372 aaKnown RBP eCLIP12.31□□□□□ -0.44
COL6A3-203ENST00000353578 HDCP19113 662 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 ALDH3B1P43353 468 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 MLLT1Q03111 559 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-203ENST00000353578 MAD2L1BPQ15013 274 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-203ENST00000353578 MGAT5BQ3V5L5 792 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 ERFEQ4G0M1 354 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 CORO2AQ92828 525 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 YIPF2Q9BWQ6 316 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 H3BMQ9 156 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 RPP40O75818 363 aaKnown RBP12.31□□□□□ -0.44
COL6A3-203ENST00000353578 FARS2O95363 451 aaKnown RBP12.31□□□□□ -0.44
COL6A3-203ENST00000353578 SLC22A25Q6T423 547 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 GALNTL5Q7Z4T8 443 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 C7orf61Q8IZ16 206 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 MRPS31Q92665 395 aaKnown RBP12.31□□□□□ -0.44
COL6A3-203ENST00000353578 COG8Q96MW5 612 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 PKP2Q99959 881 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 KCTD5Q9NXV2 234 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 SIRPGQ9P1W8 387 aa12.31□□□□□ -0.44
COL6A3-203ENST00000353578 DFFBO76075 338 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 TARDBPQ13148 414 aaKnown RBP eCLIP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 MAP1SQ66K74 1059 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 TMEM39AQ9NV64 488 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 ADGRB1O14514 1584 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 GABRDO14764 452 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 LGR5O75473 907 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 GNRH1P01148 92 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 H1F0P07305 194 aaKnown RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 SIAH1Q8IUQ4 282 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 DNAJC22Q8N4W6 341 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 GATA6Q92908 595 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 RIPOR3Q96MK2 946 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 AAASQ9NRG9 546 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 IKZF2Q9UKS7 526 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 RNF212BA8MTL3 300 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 P2RX6O15547 441 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 PGAM2P15259 253 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 PAX6P26367 422 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 PRDX5P30044 214 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 EVI2BP34910 448 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 BCL2L1Q07817 233 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 DHRS9Q9BPW9 319 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 TFB2MQ9H5Q4 396 aaKnown RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 EMC7Q9NPA0 242 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 FAM120CQ9NX05 1096 aaKnown RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 A0A075B6Q4 140 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 HCRTR2O43614 444 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 HSD17B2P37059 387 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF674Q2M3X9 581 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 HS3ST5Q8IZT8 346 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 SLC15A4Q8N697 577 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 ATP6V1C2Q8NEY4 427 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 OR5T1Q8NG75 326 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 WDR48Q8TAF3 677 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 DPP7Q9UHL4 492 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 LAMA4Q16363 1823 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 CYB561D2O14569 222 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 OR7A17O14581 309 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 GBE1Q04446 702 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 HNRNPA0Q13151 305 aaKnown RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 KIAA0930Q6ICG6 404 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 GALNT13Q8IUC8 556 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 GAB3Q8WWW8 586 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 KCTD12Q96CX2 325 aaKnown RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 VRTNQ9H8Y1 702 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 RENP00797 406 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 TPMTP51580 245 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 CRB2Q5IJ48 1285 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 LACC1Q8IV20 430 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 LGI4Q8N135 537 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 RERGQ96A58 199 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 PGAP3Q96FM1 320 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 DPEP2Q9H4A9 486 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 MROH8Q9H579 483 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 ZFC3H1O60293 1989 aaKnown RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 SEC14L2O76054 403 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 ADAP00813 363 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 MAOBP27338 520 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 IDH3GP51553 393 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 CDK10Q15131 360 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 PARP15Q460N3 678 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 EFCAB12Q6NXP0 572 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 EFCAB3Q8N7B9 438 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 C7orf43Q8WVR3 580 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 NLGN3Q9NZ94 848 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 PPP1R2P9O14990 202 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 AFF3P51826 1226 aaKnown RBP12.3□□□□□ -0.44
COL6A3-203ENST00000353578 SLC2A7Q6PXP3 512 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 FAM122BQ7Z309 247 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF584Q8IVC4 421 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 CYP4X1Q8N118 509 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 ADAMTS19Q8TE59 1207 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 PSD2Q9BQI7 771 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 FBXL21Q9UKT6 434 aa12.3□□□□□ -0.44
COL6A3-203ENST00000353578 SHPRHQ149N8 1683 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 A8MXE2 369 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 CPT1BQ92523 772 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 GTF2H4Q92759 462 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 QRSL1Q9H0R6 528 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms