RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 DCUN1D3Q8IWE4 304 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 ATF5Q9Y2D1 282 aaPredicted RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 H3BRB1 525 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 SNCGO76070 127 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 F7P08709 466 aaPredicted RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 ZNF280AP59817 542 aaPredicted RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 LRRC41Q15345 812 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 TLR1Q15399 786 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 CYP27C1Q4G0S4 372 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 NAPEPLDQ6IQ20 393 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 TMPRSS11BQ86T26 416 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 PSD4Q8NDX1 1056 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 EMC7Q9NPA0 242 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 NGRNQ9NPE2 291 aaKnown RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 MRPS23Q9Y3D9 190 aaKnown RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 CPED1A4D0V7 1026 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L5A8MUK1 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L15C9J2P7 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L12C9JPN9 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L11C9JVI0 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L21D6R901 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L18D6R9N7 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L22D6RA61 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L19D6RCP7 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L20D6RJB6 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 TOX3O15405 576 aaPredicted RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 NCK2O43639 380 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 TFE3P19532 575 aaPredicted RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 GTF2E2P29084 291 aaKnown RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 OPRL1P41146 370 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 PTPN11Q06124 597 aaPredicted RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 USP17L24Q0WX57 530 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 TTLL4Q14679 1199 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 ARHGAP40Q5TG30 622 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 STEAP3Q658P3 488 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 RCBTB1Q8NDN9 531 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 OR51L1Q8NGJ5 315 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 TFB1MQ8WVM0 346 aaKnown RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 LMAN1LQ9HAT1 526 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 LRRC4BQ9NT99 713 aa3.68□□□□□ -1.82
SYNE2-202ENST00000344113 GMPR2Q9P2T1 348 aaKnown RBP3.68□□□□□ -1.82
SYNE2-202ENST00000344113 KIAA0513O60268 411 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 ATP5C1P36542 298 aaKnown RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 AARDQ4LEZ3 155 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 EFHC2Q5JST6 749 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 GPAT4Q86UL3 456 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 NSUN6Q8TEA1 469 aaKnown RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 SLC44A1Q8WWI5 657 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 EBF3Q9H4W6 596 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 KCNJ16Q9NPI9 418 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 ZDHHC18Q9NUE0 388 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 TMEM260Q9NX78 707 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 AAR2Q9Y312 384 aaKnown RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 PCDHGB5Q9Y5G0 923 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 SPACA6W5XKT8 324 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 PDXKO00764 312 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 LHCGRP22888 699 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 RGS8P57771 180 aaPredicted RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 PPATQ06203 517 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 SSPNQ14714 243 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 FAM180BQ6P0A1 224 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 LRP10Q7Z4F1 713 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 OR13D1Q8NGV5 346 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 TOR3AQ9H497 397 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 CARNS1A5YM72 827 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 ANGPTL7O43827 346 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 PLEKP08567 350 aaPredicted RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 MAOAP21397 527 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 S100A7P31151 101 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 TAS2R43P59537 309 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 S100A10P60903 97 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 RAB1AP62820 205 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 BLOC1S1P78537 153 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 ARHGAP11BQ3KRB8 267 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 TATDN1Q6P1N9 297 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 NPRL2Q8WTW4 380 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 SNAPC3Q92966 411 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 TOX2Q96NM4 488 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 TLR4O00206 839 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 CRHP06850 196 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 APOBEC3AP31941 199 aaPredicted RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 FSCN1Q16658 493 aaKnown RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 COL5A1-AS1Q5SY13 56 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 MRNIPQ6NTE8 343 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 TIFABQ6ZNK6 161 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 ACDQ96AP0 544 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 NECAB3Q96P71 396 aaPredicted RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 FAM49AQ9H0Q0 323 aaPredicted RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 ACSS3Q9H6R3 686 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 APOBEC3BQ9UH17 382 aaKnown RBP3.67□□□□□ -1.82
SYNE2-202ENST00000344113 PLLPQ9Y342 182 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 DCLK1O15075 740 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 STK16O75716 305 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 UBXN7O94888 489 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 IVDP26440 423 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 TFDP3Q5H9I0 405 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 CHP1Q99653 195 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 ITPAQ9BY32 194 aa3.67□□□□□ -1.82
SYNE2-202ENST00000344113 CDH22Q9UJ99 828 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms