RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 GPN1Q9HCN4 374 aaPredicted RBP8.47□□□□□ -1.05
RTN3-202ENST00000339997 PRDM8Q9NQV8 689 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 PCDHGB3Q9Y5G1 929 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 FKBP7Q9Y680 259 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 A0A0X1KG70 313 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 RIIAD1A6NNX1 92 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 J3QLW9 94 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 PRSS56P0CW18 603 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 PGAM2P15259 253 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 ZNF19P17023 458 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 GNAZP19086 355 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 TNFRSF1BP20333 461 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 ACADVLP49748 655 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 HNRNPA0Q13151 305 aaKnown RBP8.47□□□□□ -1.05
RTN3-202ENST00000339997 PARP15Q460N3 678 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 ZNF627Q7L945 461 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 VTCN1Q7Z7D3 282 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 LHFPL3Q86UP9 236 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 ZNF248Q8NDW4 579 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 CCDC54Q8NEL0 328 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 OR4C6Q8NH72 309 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 ZNF431Q8TF32 576 aaPredicted RBP8.47□□□□□ -1.05
RTN3-202ENST00000339997 ZFAND2BQ8WV99 257 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 RASSF5Q8WWW0 418 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 UPF1Q92900 1129 aaKnown RBP eCLIP8.47□□□□□ -1.051e-25■■■■□ 25.8
RTN3-202ENST00000339997 AIF1LQ9BQI0 150 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 C1QTNF1Q9BXJ1 281 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 OR2AG1Q9H205 316 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 EVA1BQ9NVM1 165 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 IL20RAQ9UHF4 553 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 GJD2Q9UKL4 321 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 CPQQ9Y646 472 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 MYH6P13533 1939 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 UBR2Q8IWV8 1755 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 FAM186AA6NE01 2351 aa8.47□□□□□ -1.05
RTN3-202ENST00000339997 PAPPAQ13219 1627 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 ILVBLA1L0T0 632 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 KLHL33A6NCF5 533 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 SDHDO14521 159 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 KERAO60938 352 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 ABCB7O75027 752 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 ATG13O75143 517 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 IFNGP01579 166 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 MT-ND2P03891 347 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 ZNF10P21506 573 aaPredicted RBP8.46□□□□□ -1.05
RTN3-202ENST00000339997 RPL9P32969 192 aaKnown RBP8.46□□□□□ -1.05
RTN3-202ENST00000339997 RPL3P39023 403 aaKnown RBP8.46□□□□□ -1.05
RTN3-202ENST00000339997 SLC18A1P54219 525 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 RAB2AP61019 212 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 PTCHD3Q3KNS1 767 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 TOMM5Q8N4H5 51 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 POGLUT1Q8NBL1 392 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 COQ8AQ8NI60 647 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 LMO3Q8TAP4 145 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 LGALS12Q96DT0 336 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 KXD1Q9BQD3 176 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 SLC30A2Q9BRI3 323 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 C1orf21Q9H246 121 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 MOV10Q9HCE1 1003 aaKnown RBP8.46□□□□□ -1.05
RTN3-202ENST00000339997 FKBP14Q9NWM8 211 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 PCDHB1Q9Y5F3 818 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 ECM29Q5VYK3 1845 aa8.46□□□□□ -1.05
RTN3-202ENST00000339997 ANXA2P2A6NMY6 339 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 M0R129 80 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 TLR4O00206 839 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 CCL16O15467 120 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ESR1P03372 595 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 EPHX1P07099 455 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ANXA2P07355 339 aaKnown RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 MMP3P08254 477 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 MRPL3P09001 348 aaKnown RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 DNAJA1P31689 397 aaKnown RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 ACSL1P33121 698 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 TGFBR2P37173 567 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 GRSF1Q12849 480 aaKnown RBP eCLIP8.46□□□□□ -1.06
RTN3-202ENST00000339997 PSRC1Q6PGN9 363 aaPredicted RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 ZNF773Q6PK81 442 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 AGMOQ6ZNB7 445 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 OR8S1Q8NH09 359 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 SPPL2BQ8TCT7 592 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ZNF641Q96N77 438 aaPredicted RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 GPR22Q99680 433 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 TPT1P8Q9HAU6 139 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 MS4A12Q9NXJ0 267 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 MED31Q9Y3C7 131 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 C13orf42A0A1B0GVH6 325 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 OR14I1A6ND48 311 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 GRXCR2A6NFK2 248 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 KLF11O14901 512 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 KRT33AO76009 404 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 STSP08842 583 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ARSAP15289 507 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ACADLP28330 430 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ASMTP46597 345 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ZXDBP98169 803 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 CRY2Q49AN0 593 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 LBX2Q6XYB7 198 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 CERS6Q6ZMG9 384 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 CEP76Q8TAP6 659 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 FRS2Q8WU20 508 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms