RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 COL1A2P08123 1366 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 PLIN4Q96Q06 1357 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 A8MX80 341 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 GRID2O43424 1007 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 PRAMEF12O95522 483 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 PVALBP20472 110 aaPredicted RBP8.7□□□□□ -1.02
VCL-206ENST00000623461 DSC2Q02487 901 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 GAD2Q05329 585 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 IL10RBQ08334 325 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 C9orf64Q5T6V5 341 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 MSANTD1Q6ZTZ1 278 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 ZSWIM9Q86XI8 627 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 SDR16C5Q8N3Y7 309 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 CHCHD4Q8N4Q1 142 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 IL31RAQ8NI17 732 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 IL4I1Q96RQ9 567 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 VRTNQ9H8Y1 702 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 ABCB8Q9NUT2 735 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 ASB4Q9Y574 426 aa8.7□□□□□ -1.02
VCL-206ENST00000623461 CLCA1A8K7I4 914 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 ECI2O75521 394 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 SLC25A12O75746 678 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 MT-CYBP00156 380 aaPredicted RBP8.69□□□□□ -1.02
VCL-206ENST00000623461 CHRM5P08912 532 aaPredicted RBP8.69□□□□□ -1.02
VCL-206ENST00000623461 H2AFB2P0C5Z0 115 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 LAMP2P13473 410 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 APLP1P51693 650 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 PCDH1Q08174 1060 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 CHIT1Q13231 466 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 MOB2Q70IA6 237 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 C1orf127Q8N9H9 656 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 PHC3Q8NDX5 983 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 MAFIPQ8WZ33 124 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 PRR11Q96HE9 360 aaPredicted RBP8.69□□□□□ -1.02
VCL-206ENST00000623461 TMEM169Q96HH4 297 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 HSH2DQ96JZ2 352 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 HSPA12BQ96MM6 686 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 TMED9Q9BVK6 235 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 PCDHB16Q9NRJ7 776 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 RB1P06400 928 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 NR4A2P43354 598 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 MFSD10Q14728 455 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 EIPR1Q53HC9 387 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 SLC36A4Q6YBV0 504 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 TMPRSS11BQ86T26 416 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 MCMBPQ9BTE3 642 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 FAM120CQ9NX05 1096 aaKnown RBP8.69□□□□□ -1.02
VCL-206ENST00000623461 TRAV6A0A075B6T7 132 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 A0A1B0GVI7 797 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 A0A1W2PQ67 120 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 AP1G1O43747 822 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 XYLBO75191 536 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 IL3P08700 152 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 TACSTD2P09758 323 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 CKBP12277 381 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 CYP2B6P20813 491 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 DNASE1L1P49184 302 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 ZNF33AQ06730 810 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 CGB2Q6NT52 195 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 TFAP2CQ92754 450 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 DERL2Q9GZP9 239 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 EXTL2Q9UBQ6 330 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 RAI2Q9Y5P3 530 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 SOBPA7XYQ1 873 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 CLDN11O75508 207 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 NFKB2Q00653 900 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 SEC23BQ15437 767 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 CDKL4Q5MAI5 379 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 AGAP6Q5VW22 663 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 AQP11Q8NBQ7 271 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 GALNT11Q8NCW6 608 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 AGAP4Q96P64 663 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 NDC1Q9BTX1 674 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 ERVK13-1Q9NX77 482 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 PCDHB9Q9Y5E1 797 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 TOPAZ1Q8N9V7 1692 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 B4GALT5O43286 388 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 AQP9O43315 295 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 SCGNO76038 276 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 APOC3P02656 99 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 CTPS1P17812 591 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 AGTR1P30556 359 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 FGL1Q08830 312 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 NFE2L1Q14494 772 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 UBE2UQ5VVX9 321 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 FAM198BQ6UWH4 519 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 PLEKHH3Q7Z736 793 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 TSPYL5Q86VY4 417 aaPredicted RBP8.69□□□□□ -1.02
VCL-206ENST00000623461 C17orf64Q86WR6 236 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 SLC43A3Q8NBI5 491 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 CHST4Q8NCG5 386 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 OR5J2Q8NH18 312 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 LPIN3Q9BQK8 851 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 EBPLQ9BY08 206 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.69□□□□□ -1.021e-7■■■□□ 15
VCL-206ENST00000623461 RNF121Q9H920 327 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 FNIP2Q9P278 1114 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 VILLO15195 856 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 FSHRP23945 695 aa8.69□□□□□ -1.02
VCL-206ENST00000623461 SIX1Q15475 284 aaPredicted RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms