RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 C9orf50Q5SZB4 431 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 MMAAQ8IVH4 418 aaKnown RBP19.62■□□□□ 0.73
CLN3-230ENST00000568076 TSPAN14Q8NG11 270 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 OR52E4Q8NGH9 312 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 NEIL2Q969S2 332 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 RMND5BQ96G75 393 aaPredicted RBP19.62■□□□□ 0.73
CLN3-230ENST00000568076 REXO4Q9GZR2 422 aaKnown RBP19.62■□□□□ 0.73
CLN3-230ENST00000568076 SMPD3Q9NY59 655 aaPredicted RBP19.62■□□□□ 0.73
CLN3-230ENST00000568076 ERVK-11Q9UQG0 969 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 MYRFQ9Y2G1 1151 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 AP3M1Q9Y2T2 418 aa19.62■□□□□ 0.73
CLN3-230ENST00000568076 PCYT1BQ9Y5K3 369 aaPredicted RBP19.62■□□□□ 0.73
CLN3-230ENST00000568076 RFXANKO14593 260 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 LZTS3O60299 673 aaPredicted RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 SCN2BO60939 215 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 CLIC3O95833 236 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 PCSK2P16519 638 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 ZNF8P17098 575 aaPredicted RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 GSTT1P30711 240 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 ERVK-21P61565 698 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 RAE1P78406 368 aaKnown RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 TMEM52BQ4KMG9 183 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 CYBRD1Q53TN4 286 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 ERN2Q76MJ5 926 aaKnown RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 GPR149Q86SP6 731 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 FBXO15Q8NCQ5 510 aaPredicted RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 OR7G3Q8NG95 312 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 NCSTNQ92542 709 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 FAM162AQ96A26 154 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 FAM120BQ96EK7 910 aaKnown RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 PPP1R16AQ96I34 528 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 FBXL20Q96IG2 436 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 SAMD11Q96NU1 681 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 UGT2B28Q9BY64 529 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 ZCCHC2Q9C0B9 1178 aaKnown RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 SFXN1Q9H9B4 322 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 SLC24A3Q9HC58 644 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 TRIM39Q9HCM9 518 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 NDUFA13Q9P0J0 144 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 SH2B3Q9UQQ2 575 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 AHCYL1O43865 530 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 SH3BGRLO75368 114 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 CREG1O75629 220 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 MYCLP1P12525 358 aaPredicted RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 OPRD1P41143 372 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 TBPL1P62380 186 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 PON2Q15165 354 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 TANGO2Q6ICL3 276 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 SLCO4C1Q6ZQN7 724 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 MSANTD1Q6ZTZ1 278 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 NETO1Q8TDF5 533 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 CYGBQ8WWM9 190 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 TMBIM1Q969X1 311 aa19.61■□□□□ 0.73
CLN3-230ENST00000568076 DCAF13Q9NV06 445 aaKnown RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 THG1LQ9NWX6 298 aaKnown RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 MAGED1Q9Y5V3 778 aaPredicted RBP19.61■□□□□ 0.73
CLN3-230ENST00000568076 TBC1D3BA6NDS4 549 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 DEAF1O75398 565 aaPredicted RBP19.6■□□□□ 0.73
CLN3-230ENST00000568076 PRKD3O94806 890 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 SNAP29O95721 258 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 ETS2P15036 469 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 P2RY2P41231 377 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 ACSM2AQ08AH3 577 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 ACSM2BQ68CK6 577 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 CRTC3Q6UUV7 619 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 PLA2G15Q8NCC3 412 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 HUS1BQ8NHY5 278 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 SLC47A1Q96FL8 570 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 LINC00615Q96LM1 132 aaPredicted RBP19.6■□□□□ 0.73
CLN3-230ENST00000568076 RBM38Q9H0Z9 239 aaKnown RBP19.6■□□□□ 0.73
CLN3-230ENST00000568076 SOX17Q9H6I2 414 aaPredicted RBP19.6■□□□□ 0.73
CLN3-230ENST00000568076 BRF2Q9HAW0 419 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 RUVBL1Q9Y265 456 aaKnown RBP19.6■□□□□ 0.73
CLN3-230ENST00000568076 PCDHGA11Q9Y5H2 935 aa19.6■□□□□ 0.73
CLN3-230ENST00000568076 RANBP2P49792 3224 aaKnown RBP19.6■□□□□ 0.73
CLN3-230ENST00000568076 VILLO15195 856 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 YY2O15391 372 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 PRMT3O60678 531 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 POP7O75817 140 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 RETP07949 1114 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 HSD3B1P14060 373 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 NPPBP16860 134 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 HSD3B2P26439 372 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 MTHFRP42898 656 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 HNRNPFP52597 415 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 NR1H2P55055 460 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 NFE2L1Q14494 772 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 CATSPEREQ5SY80 951 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 OTUD3Q5T2D3 398 aaPredicted RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 DOK6Q6PKX4 331 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 VITQ6UXI7 678 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 RBM44Q6ZP01 1051 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 TMPRSS11BQ86T26 416 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 SYTL1Q8IYJ3 562 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 NELL1Q92832 810 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 PRSS16Q9NQE7 514 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 DYRK4Q9NR20 520 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 BTBD3Q9Y2F9 522 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 YBX2Q9Y2T7 364 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 FADS3Q9Y5Q0 445 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms