RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ELP6Q0PNE2 266 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 RNF19BQ6ZMZ0 732 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 CLIP4Q8N3C7 705 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 KIAA1958Q8N8K9 716 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 Q8N9G6 341 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 APH1BQ8WW43 257 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 ITM2CQ9NQX7 267 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 SNX6Q9UNH7 406 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 TESMINQ9Y4I5 508 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 GJB5O95377 273 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 COL6A1P12109 1028 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 RPS3P23396 243 aaKnown RBP eCLIP13.56□□□□□ -0.247e-7■■■■□ 25.3
VPS9D1-202ENST00000561976 DSC1Q08554 894 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 LRIT3Q3SXY7 679 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 INO80DQ53TQ3 878 aaPredicted RBP13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 DESI1Q6ICB0 168 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 ZZZ3Q8IYH5 903 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 OR6K2Q8NGY2 324 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 UBTD2Q8WUN7 234 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 SKA2Q8WVK7 121 aaPredicted RBP13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 TESCQ96BS2 214 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 APIPQ96GX9 242 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 EBPLQ9BY08 206 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 KLHL3Q9UH77 587 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 FCF1Q9Y324 198 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 A8MX80 341 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 M0R082 166 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 KCNK5O95279 499 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 C9P02748 559 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 HOXB9P17482 250 aaPredicted RBP13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 TCEA1P23193 301 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 RPIAP49247 311 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 CSNK2BP67870 215 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 FAM189BP81408 668 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 NFATC2Q13469 925 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 DUOXA1Q1HG43 343 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 CLLU1OSQ5K130 101 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 ARMC12Q5T9G4 340 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 EIF3MQ7L2H7 374 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 MYDGFQ969H8 173 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 SLX1AQ9BQ83 275 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 REXO4Q9GZR2 422 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 SLC32A1Q9H598 525 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 ZFYVE1Q9HBF4 777 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 PRM3Q9NNZ6 103 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 GKN1Q9NS71 199 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 IFT52Q9Y366 437 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 PCDHGA6Q9Y5G7 932 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 TRPM7Q96QT4 1865 aa13.56□□□□□ -0.24
VPS9D1-202ENST00000561976 A0A1B0GVM2 712 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 UPK3BL1B0FP48 263 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 UPK3BL2E5RIL1 263 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 SYN3O14994 580 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 CORO1AP31146 461 aaKnown RBP13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 GPRC6AQ5T6X5 926 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 UTS2BQ765I0 119 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 PARP16Q8N5Y8 322 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 MYO19Q96H55 970 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 PITX2Q99697 317 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 TM6SF2Q9BZW4 377 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 HOXD1Q9GZZ0 328 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.55□□□□□ -0.249e-6■■□□□ 13.2
VPS9D1-202ENST00000561976 ZNF451Q9Y4E5 1061 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 UGT2A1Q9Y4X1 527 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 OR6C75A6NL08 312 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 SLC38A8A6NNN8 435 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 MAGEB17A8MXT2 336 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 CD160O95971 181 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 PTTG1O95997 202 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 RPLP0P05388 317 aaKnown RBP13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 NUDT6P53370 316 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 ITGA1P56199 1179 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 PNCKQ6P2M8 343 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 FAHD1Q6P587 224 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 ERICH5Q6P6B1 374 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 CBLL1Q75N03 491 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 SYT12Q8IV01 421 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 SIGLEC11Q96RL6 698 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 RNF167Q9H6Y7 350 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 SPATA7Q9P0W8 599 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 CAB39Q9Y376 341 aaPredicted RBP13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 MICAL3Q7RTP6 2002 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 CHD5Q8TDI0 1954 aa13.55□□□□□ -0.24
VPS9D1-202ENST00000561976 DYRK3O43781 588 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 MED26O95402 600 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 KLKB1P03952 638 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 ZDHHC11BP0C7U3 371 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 HSMCR30P0CW71 290 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 ACRV1P26436 265 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 AQP1P29972 269 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 CYP4F2P78329 520 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 ZNF45Q02386 682 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 SOWAHCQ53LP3 525 aaPredicted RBP13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 RSBN1Q5VWQ0 802 aaPredicted RBP13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 CCBE1Q6UXH8 406 aaPredicted RBP13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 ADGRG2Q8IZP9 1017 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 TRPV1Q8NER1 839 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 KBTBD8Q8NFY9 601 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 ATL1Q8WXF7 558 aa13.54□□□□□ -0.24
VPS9D1-202ENST00000561976 CMTM7Q96FZ5 175 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms