RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 COL2A1P02458 1487 aaPredicted RBP3.45□□□□□ -1.86
CD44-217ENST00000525348 FGD5Q6ZNL6 1462 aa3.45□□□□□ -1.86
CD44-217ENST00000525348 TOP2AP11388 1531 aaKnown RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 SHROOM2Q13796 1616 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 CUL7Q14999 1698 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 ABCC8Q09428 1581 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 C2orf81A6NN90 581 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 M0QX08 132 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 KIF2AO00139 706 aaPredicted RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 ZNF195O14628 629 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 KLF11O14901 512 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 DCXO43602 365 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 RTN2O75298 545 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 SMC2O95347 1197 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 HSPA8P11142 646 aaKnown RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 PORP16435 677 aaPredicted RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 DNASE1P24855 282 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 TCF7P36402 384 aaPredicted RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 MATR3P43243 847 aaKnown RBP eCLIP3.44□□□□□ -1.86
CD44-217ENST00000525348 CCNHP51946 323 aaPredicted RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 HSPA2P54652 639 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 CDH13P55290 713 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 ZNF415Q09FC8 603 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 CHAF1BQ13112 559 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 TAF13Q15543 124 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 UGP2Q16851 508 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 FAM133BQ5BKY9 247 aaKnown RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 HYIQ5T013 277 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 CCDC122Q5T0U0 273 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 ITPRIPL1Q6GPH6 555 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 CFAP161Q6P656 301 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 Q6ZRP5 223 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 CCDC186Q7Z3E2 898 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 SPATA21Q7Z572 469 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 TMPRSS11BQ86T26 416 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 RTN4RL2Q86UN3 420 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 KIRREL3Q8IZU9 778 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 EID3Q8N140 333 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 KRT222Q8N1A0 295 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 OR5AP2Q8NGF4 316 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 GOLGA5Q8TBA6 731 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 AZIN2Q96A70 460 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 MAGED4Q96JG8 741 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 C8orf76Q96K31 380 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 TSGA13Q96PP4 275 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 PKP2Q99959 881 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 RBM4BQ9BQ04 359 aaKnown RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 MMADHCQ9H3L0 296 aaPredicted RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 FANCFQ9NPI8 374 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 SLC35C2Q9NQQ7 365 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 SERINC1Q9NRX5 453 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 EPHA6Q9UF33 1036 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 PCDHGB4Q9UN71 923 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 TIMM22Q9Y584 194 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 ANGPTL3Q9Y5C1 460 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 MAPKBP1O60336 1514 aa3.44□□□□□ -1.86
CD44-217ENST00000525348 PRG4Q92954 1404 aaPredicted RBP3.44□□□□□ -1.86
CD44-217ENST00000525348 MYH15Q9Y2K3 1946 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 IGLV7-46A0A075B6I9 117 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 ANKRD61A6NGH8 418 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 ZNF254O75437 659 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 STAM2O75886 525 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 DFFBO76075 338 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 DDHD2O94830 711 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 PGM3O95394 542 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 RPSAP08865 295 aaKnown RBP3.43□□□□□ -1.86
CD44-217ENST00000525348 SP100P23497 879 aaPredicted RBP3.43□□□□□ -1.86
CD44-217ENST00000525348 HPDP32754 393 aaPredicted RBP3.43□□□□□ -1.86
CD44-217ENST00000525348 DSCR10P59022 87 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 MAT1AQ00266 395 aaKnown RBP3.43□□□□□ -1.86
CD44-217ENST00000525348 ROR1Q01973 937 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 GCNT1Q02742 428 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 EPS8Q12929 822 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 SNX1Q13596 522 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 ENPP2Q13822 863 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 BTG3Q14201 252 aaPredicted RBP3.43□□□□□ -1.86
CD44-217ENST00000525348 BOLA3Q53S33 107 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 ELFN2Q5R3F8 820 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 BTN2A1Q7KYR7 527 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 PTAR1Q7Z6K3 402 aaPredicted RBP3.43□□□□□ -1.86
CD44-217ENST00000525348 TMEM173Q86WV6 379 aaPredicted RBP3.43□□□□□ -1.86
CD44-217ENST00000525348 OR8H2Q8N162 312 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 MARVELD2Q8N4S9 558 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 OR52N5Q8NH56 324 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 BRSK1Q8TDC3 778 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 ANKRD7Q92527 254 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 JAKMIP2Q96AA8 810 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 CALML4Q96GE6 196 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 RBM18Q96H35 190 aaKnown RBP3.43□□□□□ -1.86
CD44-217ENST00000525348 MS4A10Q96PG2 267 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 SYT15Q9BQS2 421 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 PYGO2Q9BRQ0 406 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 FUCA2Q9BTY2 467 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 CLEC7AQ9BXN2 247 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 FGFBP2Q9BYJ0 223 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 TSGA10Q9BZW7 698 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 TNMDQ9H2S6 317 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 FGF21Q9NSA1 209 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 PDRG1Q9NUG6 133 aa3.43□□□□□ -1.86
CD44-217ENST00000525348 P4HTMQ9NXG6 502 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms