RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 FPGTO14772 594 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 MID1O15344 667 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 IL1BP01584 269 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 HOXC4P09017 264 aaPredicted RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 APEHP13798 732 aaKnown RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 CD58P19256 250 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 ADRA1DP25100 572 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 RBL1P28749 1068 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 CD70P32970 193 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 HTR7P34969 479 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 DRD3P35462 400 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 GPD2P43304 727 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 SYKP43405 635 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 GCLMP48507 274 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 NEK3P51956 506 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 AIF1P55008 147 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 SGCGQ13326 291 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 TRA2AQ13595 282 aaKnown RBP eCLIP3.87□□□□□ -1.79
USP54-217ENST00000498213 CUL4BQ13620 913 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 ERV3-1Q14264 604 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 MFSD13AQ14CX5 517 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 ELOCQ15369 112 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 GOLGA7BQ2TAP0 167 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 INO80DQ53TQ3 878 aaPredicted RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 AWAT1Q58HT5 328 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 ZNF658Q5TYW1 1059 aaPredicted RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 LRRC31Q6UY01 552 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 LINGO4Q6UY18 593 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 RANBP10Q6VN20 620 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 SCARA5Q6ZMJ2 495 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 ERN2Q76MJ5 926 aaKnown RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 MMAAQ8IVH4 418 aaKnown RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 SLC35F3Q8IY50 421 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 ARL10Q8N8L6 244 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 Q8N9G6 341 aaPredicted RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 AVL9Q8NBF6 648 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 MSANTD4Q8NCY6 345 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 CCDC112Q8NEF3 446 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 ZNF548Q8NEK5 533 aaPredicted RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 LMX1AQ8TE12 382 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 DQX1Q8TE96 717 aaKnown RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 STARD8Q92502 1023 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 KLK6Q92876 244 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 KIAA1143Q96AT1 154 aaPredicted RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 ZBTB9Q96C00 473 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 TIGD1Q96MW7 591 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 ZNF48Q96MX3 618 aaPredicted RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 TEFMQ96QE5 360 aaKnown RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 TWNKQ96RR1 684 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 IL12RB2Q99665 862 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 CMKLR1Q99788 373 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 PRMT1Q99873 361 aaKnown RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 ZPBPQ9BS86 351 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 FEM1AQ9BSK4 669 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 CHST8Q9H2A9 424 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 MCCC2Q9HCC0 563 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 CHST11Q9NPF2 352 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 TBC1D23Q9NUY8 699 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 HMGXB4Q9UGU5 601 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 APPL1Q9UKG1 709 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 INTS6Q9UL03 887 aaKnown RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 CLEC4EQ9ULY5 219 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 PCDHA7Q9UN72 937 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 KLF2Q9Y5W3 355 aaPredicted RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 COL27A1Q8IZC6 1860 aaPredicted RBP3.87□□□□□ -1.79
USP54-217ENST00000498213 RP1P56715 2156 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 MEGF8Q7Z7M0 2845 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 IGLV3-10A0A075B6K4 115 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 A6NCN8 305 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 A8MVJ9 347 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 C19orf84I3L1E1 186 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 SOCS2O14508 198 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 MDM4O15151 490 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 KCNN4O15554 427 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 AQP9O43315 295 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 NUDT21O43809 227 aaKnown RBP3.86□□□□□ -1.79
USP54-217ENST00000498213 LSM8O95777 96 aaKnown RBP3.86□□□□□ -1.79
USP54-217ENST00000498213 TRUB2O95900 331 aaKnown RBP3.86□□□□□ -1.79
USP54-217ENST00000498213 HRGP04196 525 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 PRLRP16471 622 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 ZNF18P17022 549 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 DESP17661 470 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 TEAD1P28347 426 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CHRNA3P32297 505 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CASP4P49662 377 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 PGFP49763 221 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CLDN2P57739 230 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 PFN3P60673 137 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 MC1RQ01726 317 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 ZNF91Q05481 1191 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 RAD51Q06609 339 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 ELP6Q0PNE2 266 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CHAF1BQ13112 559 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 C1orf61Q13536 156 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 LAMB3Q13751 1172 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 GBX1Q14549 363 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 KCNAB1Q14722 419 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 C16orf72Q14CZ0 275 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 DLG2Q15700 870 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 ZNF630Q2M218 657 aaPredicted RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms