RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ALYREFQ86V81 257 aaKnown RBP11.78□□□□□ -0.52
SDC1-206ENST00000482879 TRIM42Q8IWZ5 723 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 OR4D9Q8NGE8 314 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 TRPC4APQ8TEL6 797 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 CNDP1Q96KN2 507 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 PRAP1Q96NZ9 151 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 DPH7Q9BTV6 452 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 KLHL25Q9H0H3 589 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 SEMA6CQ9H3T2 930 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 GSTO2Q9H4Y5 243 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 ZBTB26Q9HCK0 441 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 C1GALT1Q9NS00 363 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 TMEM184CQ9NVA4 438 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 CUEDC1Q9NWM3 386 aaPredicted RBP11.78□□□□□ -0.52
SDC1-206ENST00000482879 SNX7Q9UNH6 387 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 KLHL20Q9Y2M5 609 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 MN1Q10571 1320 aaPredicted RBP11.78□□□□□ -0.52
SDC1-206ENST00000482879 SLC9B1P1A6NJY1 282 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 A8MU76 341 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 D6RAR5 112 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 E7EQ34 232 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 PPP6CO00743 305 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 OR7A17O14581 309 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 GIPC1O14908 333 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 NPHS1O60500 1241 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 MLYCDO95822 493 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 FTH1P19P0C7X4 201 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 C1GALT1C1LP0DN25 315 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 CDK4P11802 303 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 ST6GAL1P15907 406 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 MAGP20916 626 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 SDHBP21912 280 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 HRH2P25021 359 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 GRK2P25098 689 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 GRIA3P42263 894 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 CCR10P46092 362 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 NOVA1P51513 510 aaKnown RBP11.77□□□□□ -0.53
SDC1-206ENST00000482879 CCR8P51685 355 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 IRF8Q02556 426 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 CHIT1Q13231 466 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 STX3Q13277 289 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 RCN2Q14257 317 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 NAA25Q14CX7 972 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 XKR6Q5GH73 641 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 RBM44Q6ZP01 1051 aaKnown RBP11.77□□□□□ -0.53
SDC1-206ENST00000482879 SLCO4C1Q6ZQN7 724 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 ADCK2Q7Z695 626 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 MILR1Q7Z6M3 343 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 TMPRSS11BQ86T26 416 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 ABHD11Q8NFV4 315 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 OR6Y1Q8NGX8 325 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 ZNF75CPQ92670 426 aaPredicted RBP11.77□□□□□ -0.53
SDC1-206ENST00000482879 ZUFSPQ96AP4 578 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 TRAPPC9Q96Q05 1148 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 MANSC1Q9H8J5 431 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 ACTR8Q9H981 624 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 PELI2Q9HAT8 420 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 SLC6A20Q9NP91 592 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 FAM53CQ9NYF3 392 aa11.77□□□□□ -0.53
SDC1-206ENST00000482879 APOBEC2Q9Y235 224 aaKnown RBP11.77□□□□□ -0.53
SDC1-206ENST00000482879 IGHV5-51A0A0C4DH38 117 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 IGKV1-8A0A0C4DH67 115 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 IGHV5-10-1A0A0J9YXX1 117 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 TMEM114B3SHH9 223 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 PRAMEF10O60809 474 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 PRAMEF4O60810 478 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 KCNK5O95279 499 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 ZBTB11O95625 1053 aaPredicted RBP11.76□□□□□ -0.53
SDC1-206ENST00000482879 OTCP00480 354 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 THRAP10827 490 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 VARSP26640 1264 aaKnown RBP11.76□□□□□ -0.53
SDC1-206ENST00000482879 SERPINB5P36952 375 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 ARL4DP49703 201 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 SEPHS1P49903 392 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 ABCE1P61221 599 aaKnown RBP11.76□□□□□ -0.53
SDC1-206ENST00000482879 CSNK1G2P78368 415 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 INSM1Q01101 510 aaPredicted RBP11.76□□□□□ -0.53
SDC1-206ENST00000482879 PCDH1Q08174 1060 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 LCP2Q13094 533 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 DOC2AQ14183 400 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 ARL13AQ5H913 290 aaPredicted RBP11.76□□□□□ -0.53
SDC1-206ENST00000482879 PHF19Q5T6S3 580 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 PRAMEF9Q5VWM5 478 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 CES4AQ5XG92 561 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 ATG9BQ674R7 924 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 ATG16L1Q676U5 607 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 FCRL6Q6DN72 434 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 ZNF425Q6IV72 752 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 DHRS13Q6UX07 377 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 PRSS42Q7Z5A4 293 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 MYLK4Q86YV6 388 aaPredicted RBP11.76□□□□□ -0.53
SDC1-206ENST00000482879 CARFQ8N187 725 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 DCBLD1Q8N8Z6 715 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 OR52B6Q8NGF0 335 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 RAB3IL1Q8TBN0 382 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 LRRC8CQ8TDW0 803 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 CKAP2Q8WWK9 683 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 CCDC74BQ96LY2 380 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 ZNF382Q96SR6 550 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 AIF1LQ9BQI0 150 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms