RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PARP16Q8N5Y8 322 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 UPF1Q92900 1129 aaKnown RBP eCLIP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 TCF25Q9BQ70 676 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 MTG1Q9BT17 334 aaPredicted RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 HERC2P3Q9BVR0 1158 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 MIR1-1HGQ9H1L0 117 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 IARS2Q9NSE4 1012 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 DDX28Q9NUL7 540 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 NDUFB11Q9NX14 153 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 TAS2R7Q9NYW3 318 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 TMEM129A0AVI4 362 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CHRNB1P11230 501 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ANXA8P13928 327 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 HGFP14210 728 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 KDELR2P33947 212 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CTNNB1P35222 781 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SEC23BQ15437 767 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 KIAA1614Q5VZ46 1190 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ZNF280DQ6N043 979 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 C16orf59Q7L2K0 433 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SCD5Q86SK9 330 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ZSWIM9Q86XI8 627 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 SH3RF2Q8TEC5 729 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 FUBP3Q96I24 572 aaKnown RBP eCLIP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 MRPL45Q9BRJ2 306 aaKnown RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 CINPQ9BW66 212 aaPredicted RBP5.2□□□□□ -1.58
SYNE1-220ENST00000471834 MYOZ2Q9NPC6 264 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ZC4H2Q9NQZ6 224 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 FBXL3Q9UKT7 428 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 Q9Y3F1 56 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ASB4Q9Y574 426 aa5.2□□□□□ -1.58
SYNE1-220ENST00000471834 ZAR1LA6NP61 321 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 UGDHO60701 494 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 CD4P01730 458 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 TP53P04637 393 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 AGXTP21549 392 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 MAPKAPK2P49137 400 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SLC16A1P53985 500 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 ATXN1P54253 815 aaKnown RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 USP39Q53GS9 565 aaKnown RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 CLLU1Q5K131 121 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 ZNF544Q6NX49 715 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 HTR3DQ70Z44 454 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 GPAT4Q86UL3 456 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 FAM131BQ86XD5 332 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SYNPOQ8N3V7 929 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 CLEC4CQ8WTT0 213 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 MED8Q96G25 268 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 GPR137Q96N19 417 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 TIMP4Q99727 224 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 MGME1Q9BQP7 344 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SLC39A3Q9BRY0 314 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 TAS2R13Q9NYV9 303 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 CTDSP2O14595 271 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SLC9A3R1O14745 358 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 GJB1P08034 283 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 HNRNPLP14866 589 aaKnown RBP eCLIP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 C10orf120Q5SQS8 335 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 TIGD7Q6NT04 549 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 CYP2R1Q6VVX0 501 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 CHST15Q7LFX5 561 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 GRAMD2AQ8IUY3 354 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 ADHFE1Q8IWW8 467 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SIX5Q8N196 739 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 TBC1D19Q8N5T2 526 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 RBFOX1Q9NWB1 397 aaKnown RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 MARCH4Q9P2E8 410 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SLC45A1Q9Y2W3 748 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 ARIH1Q9Y4X5 557 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 B4DXG7 233 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 HMGB3O15347 200 aaKnown RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 ITGB6P18564 788 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 GLRBP48167 497 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 DAPP51397 102 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 IL10RBQ08334 325 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 TEAD4Q15561 434 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 ESCO2Q56NI9 601 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 FAM171A1Q5VUB5 890 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 PTRHD1Q6GMV3 140 aaKnown RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SLCO6A1Q86UG4 719 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SCUBE3Q8IX30 993 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SOCS4Q8WXH5 440 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 COQ8BQ96D53 544 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 CDCA5Q96FF9 252 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 KLHL15Q96M94 604 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 OPALINQ96PE5 141 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 TRNT1Q96Q11 434 aaKnown RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 BARD1Q99728 777 aaKnown RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 TBL1YQ9BQ87 522 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 DCSTAMPQ9H295 470 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 CXCL16Q9H2A7 254 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 POMKQ9H5K3 350 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 CYP4F12Q9HCS2 524 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 NLE1Q9NVX2 485 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-220ENST00000471834 KCMF1Q9P0J7 381 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 PHF11Q9UIL8 331 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 SATB2Q9UPW6 733 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 PCDHGB7Q9Y5F8 929 aa5.19□□□□□ -1.58
SYNE1-220ENST00000471834 DICER1Q9UPY3 1922 aaKnown RBP5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms