RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NACC2Q96BF6 587 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 FBXL8Q96CD0 374 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 HSPBAP1Q96EW2 488 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 TPT1P8Q9HAU6 139 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 ARMC1Q9NVT9 282 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 RWDD3Q9Y3V2 267 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 LOC100130705A0A1B0GUX0 176 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 XPNPEP2O43895 674 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 SRCP12931 536 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 ZNF182P17025 639 aaPredicted RBP11.3□□□□□ -0.6
NPHP4-204ENST00000460696 ITGB8P26012 769 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 KRT20P35900 424 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 ENTPD1P49961 510 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 CDC42P60953 191 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 TUBA4AP68366 448 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 C2orf27AQ580R0 203 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 OR2T5Q6IEZ7 315 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 RNF111Q6ZNA4 994 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 TRIM69Q86WT6 500 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 OR8H2Q8N162 312 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 OR2T29Q8NH02 315 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 IRF7Q92985 503 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 PYURFQ96I23 114 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 ZNF597Q96LX8 424 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 KPNA4O00629 521 aaPredicted RBP11.3□□□□□ -0.6
NPHP4-204ENST00000460696 E2F3O00716 465 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 TGM5O43548 720 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 SOX6P35712 828 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 SSR2P43308 183 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 RXRGP48443 463 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 DEFA1P59665 94 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 DEFA3P59666 94 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 RAB33AQ14088 237 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 ZC3H12BQ5HYM0 836 aaKnown RBP11.3□□□□□ -0.6
NPHP4-204ENST00000460696 FAM26DQ5JW98 314 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 PAGE2Q7Z2X7 111 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 WBP2Q969T9 261 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 RHBDF1Q96CC6 855 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 SCRN2Q96FV2 425 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 FERD3LQ96RJ6 166 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 MCMBPQ9BTE3 642 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 MIR1-1HGQ9H1L0 117 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 GPSM3Q9Y4H4 160 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 A0A1B0GTL3 188 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 A0A1B0GVG6 124 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 B4GAT1O43505 415 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 NDUFS2O75306 463 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PEX11BO96011 259 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PCCBP05166 539 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 CBSLP0DN79 551 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 ZNF26P17031 533 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 ITGA2P17301 1181 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 CXCR2P25025 360 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 VIPR1P32241 457 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 CBSP35520 551 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 HSPB3Q12988 150 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PCBP2Q15366 365 aaKnown RBP eCLIP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 SYT16Q17RD7 645 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 DPY19L1Q2PZI1 675 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 TNFAIP8L2Q6P589 184 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 CD300LGQ6UXG3 332 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PRR23BQ6ZRT6 265 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 Q6ZSR9 355 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 RFLNAQ6ZTI6 216 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 GALNT7Q86SF2 657 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 OR2T11Q8NH01 316 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 BIRC8Q96P09 236 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 DPH2Q9BQC3 489 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PBX4Q9BYU1 374 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 LINC00597Q9H2U6 94 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 EBF1Q9UH73 591 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 TRPS1Q9UHF7 1281 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 TBX21Q9UL17 535 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 KLHL20Q9Y2M5 609 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 ARID2Q68CP9 1835 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 TRBV23OR9-2A0A075B6M9 112 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PLOD2O00469 737 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 TRIM24O15164 1050 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 RPL3P39023 403 aaKnown RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 ANXA11P50995 505 aaKnown RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PLA2G16P53816 162 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 RPS13P62277 151 aaKnown RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 SF1Q15637 639 aaKnown RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 COQ5Q5HYK3 327 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 GCNT6Q5T4J0 391 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 KIAA1324Q6UXG2 1013 aaKnown RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 MMAAQ8IVH4 418 aaKnown RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 OR8J3Q8NGG0 315 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 WFDC5Q8TCV5 224 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 LKAAEAR1Q8TD35 194 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 ISOC1Q96CN7 298 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 EGLN2Q96KS0 407 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 RIPOR3Q96MK2 946 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 NUAK2Q9H093 628 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 RHBGQ9H310 441 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 RETREG1Q9H6L5 497 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PREBQ9HCU5 417 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 HCFC1R1Q9NWW0 138 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 LHX3Q9UBR4 397 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 CNOT11Q9UKZ1 510 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms