RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 HSPB3Q12988 150 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 DGKKQ5KSL6 1271 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 PLEKHS1Q5SXH7 462 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 TNFAIP8L2Q6P589 184 aaPredicted RBP18.01■□□□□ 0.47
USP48-204ENST00000400301 TMCO2Q7Z6W1 182 aaPredicted RBP18.01■□□□□ 0.47
USP48-204ENST00000400301 OOSP2Q86WS3 158 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 CEP295NLQ96MC4 621 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 KCNC2Q96PR1 638 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 TEFMQ96QE5 360 aaKnown RBP18.01■□□□□ 0.47
USP48-204ENST00000400301 SPATA5L1Q9BVQ7 753 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 THUMPD1Q9NXG2 353 aaKnown RBP18.01■□□□□ 0.47
USP48-204ENST00000400301 GPSM3Q9Y4H4 160 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 ABHD14A-ACY1A0A1B0GW23 586 aa18■□□□□ 0.47
USP48-204ENST00000400301 FADS2P1A8MWK0 482 aa18■□□□□ 0.47
USP48-204ENST00000400301 ETV3P41162 512 aa18■□□□□ 0.47
USP48-204ENST00000400301 CLDN8P56748 225 aa18■□□□□ 0.47
USP48-204ENST00000400301 ZNF648Q5T619 568 aaPredicted RBP18■□□□□ 0.47
USP48-204ENST00000400301 ARMC6Q6NXE6 501 aa18■□□□□ 0.47
USP48-204ENST00000400301 WDR36Q8NI36 951 aaKnown RBP18■□□□□ 0.47
USP48-204ENST00000400301 SLC22A17Q8WUG5 538 aa18■□□□□ 0.47
USP48-204ENST00000400301 SLC35A5Q9BS91 424 aa18■□□□□ 0.47
USP48-204ENST00000400301 IL36AQ9UHA7 158 aa18■□□□□ 0.47
USP48-204ENST00000400301 GNRH1P01148 92 aa18■□□□□ 0.47
USP48-204ENST00000400301 MTHFD2P13995 350 aa18■□□□□ 0.47
USP48-204ENST00000400301 TNNI3P19429 210 aa18■□□□□ 0.47
USP48-204ENST00000400301 PSMD7P51665 324 aa18■□□□□ 0.47
USP48-204ENST00000400301 RSBN1Q5VWQ0 802 aaPredicted RBP18■□□□□ 0.47
USP48-204ENST00000400301 BHLHB9Q6PI77 547 aa18■□□□□ 0.47
USP48-204ENST00000400301 CRTC1Q6UUV9 634 aa18■□□□□ 0.47
USP48-204ENST00000400301 HEATR4Q86WZ0 1026 aa18■□□□□ 0.47
USP48-204ENST00000400301 MTERF3Q96E29 417 aa18■□□□□ 0.47
USP48-204ENST00000400301 M0QX08 132 aa18■□□□□ 0.47
USP48-204ENST00000400301 LATS1O95835 1130 aa18■□□□□ 0.47
USP48-204ENST00000400301 CD36P16671 472 aa18■□□□□ 0.47
USP48-204ENST00000400301 RPS13P62277 151 aaKnown RBP18■□□□□ 0.47
USP48-204ENST00000400301 SP140Q13342 867 aa18■□□□□ 0.47
USP48-204ENST00000400301 SPIN4Q56A73 249 aa18■□□□□ 0.47
USP48-204ENST00000400301 ARMC8Q8IUR7 673 aa18■□□□□ 0.47
USP48-204ENST00000400301 OR4K1Q8NGD4 311 aa18■□□□□ 0.47
USP48-204ENST00000400301 KLF16Q9BXK1 252 aaPredicted RBP18■□□□□ 0.47
USP48-204ENST00000400301 OR51B5Q9H339 312 aa18■□□□□ 0.47
USP48-204ENST00000400301 KRCC1Q9NPI7 259 aaPredicted RBP18■□□□□ 0.47
USP48-204ENST00000400301 COQ6Q9Y2Z9 468 aa18■□□□□ 0.47
USP48-204ENST00000400301 FGF18O76093 207 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 GADD45GO95257 159 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 SEPHS1P49903 392 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 SCARB2Q14108 478 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 TEAD2Q15562 447 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 PDZK1Q5T2W1 519 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 SLC8B1Q6J4K2 584 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 BHLHA9Q7RTU4 235 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 TM9SF3Q9HD45 589 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 USP22Q9UPT9 525 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 ISM1B1AKI9 464 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 NPAS3Q8IXF0 933 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 LGI4Q8N135 537 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 MFSD2AQ8NA29 543 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 SCRN2Q96FV2 425 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 TMEM245Q9H330 911 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 CRISPLD1Q9H336 500 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 TUBB1Q9H4B7 451 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 SEMA3GQ9NS98 782 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 NPIPB15A6NHN6 443 aaPredicted RBP17.99■□□□□ 0.47
USP48-204ENST00000400301 PITPNM1O00562 1244 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 E2F3O00716 465 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 TSPAN6O43657 245 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 LEFTY1O75610 366 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 PMS2P3Q13401 168 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 GANABQ14697 944 aaKnown RBP17.99■□□□□ 0.47
USP48-204ENST00000400301 VMACQ2NL98 169 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 TRIM74Q86UV6 250 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 CNIH3Q8TBE1 160 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 USP7Q93009 1102 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 ITM2CQ9NQX7 267 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 FAM118AQ9NWS6 357 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 BTBD3Q9Y2F9 522 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 A0A1B0GVG6 124 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 CCNB2O95067 398 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 KLK1P06870 262 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 ANXA8P13928 327 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 RPS3P23396 243 aaKnown RBP eCLIP17.99■□□□□ 0.47
USP48-204ENST00000400301 KDELR2P33947 212 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 ZNF829Q3KNS6 432 aaPredicted RBP17.99■□□□□ 0.47
USP48-204ENST00000400301 GALNT10Q86SR1 603 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 ZIC5Q96T25 663 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 RHBGQ9H310 441 aa17.99■□□□□ 0.47
USP48-204ENST00000400301 NFATC1O95644 943 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 PCCBP05166 539 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 SGSHP51688 502 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 RAB33AQ14088 237 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 FAM26DQ5JW98 314 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 AFMIDQ63HM1 303 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 C16orf62Q7Z3J2 963 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 TMEM173Q86WV6 379 aaPredicted RBP17.98■□□□□ 0.47
USP48-204ENST00000400301 HTRA1Q92743 480 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 ZNF347Q96SE7 839 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 CLSTN3Q9BQT9 956 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 TPK1Q9H3S4 243 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 HEBP1Q9NRV9 189 aa17.98■□□□□ 0.47
USP48-204ENST00000400301 TOR4AQ9NXH8 423 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms