RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 CNTN4Q8IWV2 1026 aa7□□□□□ -1.29
VCAN-202ENST00000342785 HDAC2Q92769 488 aaKnown RBP7□□□□□ -1.29
VCAN-202ENST00000342785 TRIM63Q969Q1 353 aa7□□□□□ -1.29
VCAN-202ENST00000342785 ZBED6CLQ96FA7 236 aaPredicted RBP7□□□□□ -1.29
VCAN-202ENST00000342785 C3orf30Q96M34 536 aa7□□□□□ -1.29
VCAN-202ENST00000342785 PKP4Q99569 1192 aa7□□□□□ -1.29
VCAN-202ENST00000342785 SLC35A5Q9BS91 424 aa7□□□□□ -1.29
VCAN-202ENST00000342785 C11orf16Q9NQ32 467 aa7□□□□□ -1.29
VCAN-202ENST00000342785 TDP1Q9NUW8 608 aa7□□□□□ -1.29
VCAN-202ENST00000342785 NDOR1Q9UHB4 597 aa7□□□□□ -1.29
VCAN-202ENST00000342785 LAMA4Q16363 1823 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 A0A0U1RQS6 177 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 A0A1W2PQ45 241 aaPredicted RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 A0A1W2PQY0 241 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 C2orf78A6NCI8 922 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 TPST2O60704 377 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 CLPXO76031 633 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 ARCN1P48444 511 aaKnown RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 IQCCQ4KMZ1 466 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 MBOAT1Q6ZNC8 495 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 USP30Q70CQ3 517 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 CHMP1BQ7LBR1 199 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 AKAP14Q86UN6 197 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 ZFAND4Q86XD8 727 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 NPAS3Q8IXF0 933 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 OR4K1Q8NGD4 311 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 KAT2AQ92830 837 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 POLR2J2Q9GZM3 115 aaKnown RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 RIMKLBQ9ULI2 386 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 SPATA2Q9UM82 520 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 PDPK1O15530 556 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 NUDT14O95848 222 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 ZNF30P17039 623 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 RAB39AQ14964 217 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 KANK2Q63ZY3 851 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 ATG9BQ674R7 924 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 FAM124AQ86V42 546 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 TICAM1Q8IUC6 712 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 ANKLE1Q8NAG6 615 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 TMIGD2Q96BF3 282 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 KCNC2Q96PR1 638 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 RETREG1Q9H6L5 497 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 GIN1Q9NXP7 522 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 FBXW2Q9UKT8 454 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 FAM240BA0A1B0GVZ2 78 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 UPK3BL1B0FP48 263 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 UPK3BL2E5RIL1 263 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 OR10H2O60403 315 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 FOXD2O60548 495 aaPredicted RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 GABBR2O75899 941 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 CTSEP14091 401 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 RPL4P36578 427 aaKnown RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 BDKRB1P46663 353 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 TARDBPQ13148 414 aaKnown RBP eCLIP6.99□□□□□ -1.29
VCAN-202ENST00000342785 CBX3Q13185 183 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 LRP8Q14114 963 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 HLA-DQA1Q5Y7H0 255 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 PSRC1Q6PGN9 363 aaPredicted RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 C17orf99Q6UX52 265 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 SMYD1Q8NB12 490 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 CYB5D2Q8WUJ1 264 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 OVCA2Q8WZ82 227 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 CLIP3Q96DZ5 547 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 TRIT1Q9H3H1 467 aaKnown RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 WNT6Q9Y6F9 365 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 PLCH1Q4KWH8 1693 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 RP1L1Q8IWN7 2480 aaPredicted RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 ADAMTS7Q9UKP4 1686 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 SCAMP1O15126 338 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 PENKP01210 267 aaPredicted RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 C9P02748 559 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 IFNA16P05015 189 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 PIGFQ07326 219 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 SEMA3BQ13214 749 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 ZSWIM7Q19AV6 140 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 GTDC1Q4AE62 458 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 SPIN4Q56A73 249 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 LSMEM2Q8N112 164 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 SCML4Q8N228 414 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 LINC01465Q8N7H1 131 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 PRICKLE1Q96MT3 831 aaPredicted RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 BOCQ9BWV1 1114 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 LMAN2LQ9H0V9 348 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 DNTTP04053 509 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 GPX3P22352 226 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 MORN1Q5T089 497 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 ZNF544Q6NX49 715 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 CYP4V2Q6ZWL3 525 aaPredicted RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 MAVSQ7Z434 540 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 DPF3Q92784 378 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 SMIM14Q96QK8 99 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 CCM2Q9BSQ5 444 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 OSBPL10Q9BXB5 764 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 SMG9Q9H0W8 520 aaKnown RBP6.99□□□□□ -1.29
VCAN-202ENST00000342785 TM9SF3Q9HD45 589 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 ARMC1Q9NVT9 282 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 OSER1Q9NX31 292 aa6.99□□□□□ -1.29
VCAN-202ENST00000342785 TFAP2AP05549 437 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms