RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TAF1AQ15573 450 aaPredicted RBP13.95□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.95□□□□□ -0.187e-7■■□□□ 12.1
COL7A1-201ENST00000328333 CLIP3Q96DZ5 547 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 RHBGQ9H310 441 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 CPSF4LA6NMK7 179 aaKnown RBP13.95□□□□□ -0.18
COL7A1-201ENST00000328333 hCG_2039718K7EN88 272 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 PAGE1O75459 146 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 THEGLP0DJG4 465 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 CMPK1P30085 196 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 TNFRSF25Q93038 417 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 SLC35G5Q96KT7 338 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 SCN3AQ9NY46 2000 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 XPNPEP2O43895 674 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 NXPE1Q8N323 547 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 PLD5Q8N7P1 536 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 MAFFQ9ULX9 164 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 KIF13BQ9NQT8 1826 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 A0A1W2PPM1 405 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 CD6P30203 668 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 NDST2P52849 883 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 JPH3Q8WXH2 748 aaPredicted RBP13.95□□□□□ -0.18
COL7A1-201ENST00000328333 OR52B2Q96RD2 323 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 COL20A1Q9P218 1284 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 SOX30O94993 753 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 HTR2BP41595 481 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 DGKGP49619 791 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 CCR8P51685 355 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 ANKRD22Q5VYY1 191 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 SLC16A9Q7RTY1 509 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 PLPPR4Q7Z2D5 763 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 RD3Q7Z3Z2 195 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 SDCBP2Q9H190 292 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 PTTG3PQ9NZH4 202 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 GRM6O15303 877 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 CD79BP40259 229 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 PPP5CP53041 499 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 SP140Q13342 867 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 PIAS4Q8N2W9 510 aaPredicted RBP13.95□□□□□ -0.18
COL7A1-201ENST00000328333 RNF181Q9P0P0 153 aa13.95□□□□□ -0.18
COL7A1-201ENST00000328333 B3GALT2O43825 422 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 BANF1O75531 89 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 GLUD2P49448 558 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 KCNC4Q03721 635 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 SCARB2Q14108 478 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 CLEC6AQ6EIG7 209 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ABI3Q9P2A4 366 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 UNC13CQ8NB66 2214 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 NOBOXO60393 691 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 CBSLP0DN79 551 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 KLRC2P26717 231 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 CBSP35520 551 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 C2orf80Q0P641 193 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 LGI4Q8N135 537 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 CPT1BQ92523 772 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ACSL5Q9ULC5 683 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 FKBP1AP62942 108 aaKnown RBP13.94□□□□□ -0.18
COL7A1-201ENST00000328333 LRIF1Q5T3J3 769 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 SMYD5Q6GMV2 418 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 PSD4Q8NDX1 1056 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 OR56A1Q8NGH5 318 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 TMEM121BQ9BXQ6 578 aaPredicted RBP13.94□□□□□ -0.18
COL7A1-201ENST00000328333 PPA2Q9H2U2 334 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 GFOD1Q9NXC2 390 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 TMPRSS11EQ9UL52 423 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 TBC1D3BA6NDS4 549 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 LATS1O95835 1130 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF529Q6P280 563 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 SETD6Q8TBK2 473 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 FKBP10Q96AY3 582 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 RAD9AQ99638 391 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ACO2Q99798 780 aaKnown RBP13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ENAMQ9NRM1 1142 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 RHPN2P1A8MT19 583 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 SLC16A8O95907 504 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 TLR1Q15399 786 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 CLIP4Q8N3C7 705 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 FTMTQ8N4E7 242 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 CNTN3Q9P232 1028 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ERVK-19Q9WJR5 959 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 KIDINS220Q9ULH0 1771 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 GTF2IRD2BQ6EKJ0 949 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ABHD13Q7L211 337 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 GTF2IRD2Q86UP8 949 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 CKAP5Q14008 2032 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 TRIM64BA6NI03 449 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF670-ZNF695F2Z2N8 137 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 FLRT2O43155 660 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ATP6AP1Q15904 470 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 YIPF7Q8N8F6 280 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 MOAP1Q96BY2 351 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 GPATCH2Q9NW75 528 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 FAM120CQ9NX05 1096 aaKnown RBP13.94□□□□□ -0.18
COL7A1-201ENST00000328333 CACNA1DQ01668 2161 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF182P17025 639 aaPredicted RBP13.94□□□□□ -0.18
COL7A1-201ENST00000328333 BMP8BP34820 402 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 SF1Q15637 639 aaKnown RBP13.94□□□□□ -0.18
COL7A1-201ENST00000328333 RALGPS1Q5JS13 557 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 RFWD3Q6PCD5 774 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 BMP8AQ7Z5Y6 402 aa13.94□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF696Q9H7X3 374 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms