RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 HSD17B2P37059 387 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 BDKRB1P46663 353 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 VSX2P58304 361 aaPredicted RBP17.61■□□□□ 0.41
CLN3-241ENST00000635861 CRADDP78560 199 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 SARNPP82979 210 aaKnown RBP17.61■□□□□ 0.41
CLN3-241ENST00000635861 OCA2Q04671 838 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 ARHGAP19Q14CB8 494 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 MUM1Q2TAK8 710 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 CTSL3PQ5NE16 218 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 B3GNTL1Q67FW5 361 aaPredicted RBP17.61■□□□□ 0.41
CLN3-241ENST00000635861 KIRREL2Q6UWL6 708 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 OTUD6BQ8N6M0 293 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 LPGAT1Q92604 370 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 MVB12AQ96EY5 273 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 LHPPQ9H008 270 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 KCNF1Q9H3M0 494 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 EPS8L2Q9H6S3 715 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 ZNF304Q9HCX3 659 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 FAM114A2Q9NRY5 505 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 SLC5A6Q9Y289 635 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 OR2A25A4D2G3 310 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 PCDH17O14917 1159 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 PRPF4O43172 522 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLN3-241ENST00000635861 VPS26AO75436 327 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 VAPBO95292 243 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 PAMP19021 973 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 ARNTP27540 789 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 TSFMP43897 325 aaKnown RBP17.6■□□□□ 0.41
CLN3-241ENST00000635861 FOXL2P58012 376 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 ANKRD20A4Q4UJ75 823 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 KIAA0930Q6ICG6 404 aaPredicted RBP17.6■□□□□ 0.41
CLN3-241ENST00000635861 CNSTQ6PJW8 725 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 CUZD1Q86UP6 607 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 ST6GALNAC3Q8NDV1 305 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 MFSD3Q96ES6 412 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 MIPEPQ99797 713 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 ZFYVE21Q9BQ24 234 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 SOX17Q9H6I2 414 aaPredicted RBP17.6■□□□□ 0.41
CLN3-241ENST00000635861 SYBUQ9NX95 663 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 UTP6Q9NYH9 597 aaKnown RBP17.6■□□□□ 0.41
CLN3-241ENST00000635861 CTSFQ9UBX1 484 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 ZNF282Q9UDV7 671 aaPredicted RBP17.6■□□□□ 0.41
CLN3-241ENST00000635861 CDC14AQ9UNH5 594 aa17.6■□□□□ 0.41
CLN3-241ENST00000635861 IGLV3-12A0A075B6K2 115 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 A0A1W2PPV9 198 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 ZNF839A8K0R7 811 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 HPP00738 406 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 LDLRP01130 860 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 FGGP02679 453 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 ATXN8OSP0DMR3 200 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 ERVK-10P10266 1014 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 MGAT1P26572 445 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 PSMB5P28074 263 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 OR1D4P47884 311 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 GLRBP48167 497 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 CCSMST1Q4G0I0 132 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 TRIM58Q8NG06 486 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 OR11G2Q8NGC1 345 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 OR9A1PQ8NGU1 263 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 SMPDL3AQ92484 453 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 MIEF2Q96C03 454 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 C5orf34Q96MH7 638 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 CRB3Q9BUF7 120 aa17.59■□□□□ 0.41
CLN3-241ENST00000635861 ZBTB20Q9HC78 741 aaPredicted RBP17.59■□□□□ 0.41
CLN3-241ENST00000635861 ERRFI1Q9UJM3 462 aaPredicted RBP17.59■□□□□ 0.41
CLN3-241ENST00000635861 NOVA2Q9UNW9 492 aaKnown RBP17.59■□□□□ 0.41
CLN3-241ENST00000635861 MYO9AB2RTY4 2548 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 SCN2AQ99250 2005 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.58■□□□□ 0.41
CLN3-241ENST00000635861 A0A0J9YVX5 310 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 MYO1CO00159 1063 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 PSIP1O75475 530 aaKnown RBP17.58■□□□□ 0.41
CLN3-241ENST00000635861 FDXRP22570 491 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 FMO4P31512 558 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 MAGEA6P43360 314 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 RELAQ04206 551 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 FRMPD2BQ6IN97 320 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 NEK10Q6ZWH5 1172 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 MAMDC2Q7Z304 686 aaPredicted RBP17.58■□□□□ 0.41
CLN3-241ENST00000635861 STT3BQ8TCJ2 826 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.58■□□□□ 0.41
CLN3-241ENST00000635861 LMF1Q96S06 567 aa17.58■□□□□ 0.41
CLN3-241ENST00000635861 INTS10Q9NVR2 710 aaKnown RBP17.58■□□□□ 0.41
CLN3-241ENST00000635861 ZC3H7BQ9UGR2 993 aaKnown RBP17.58■□□□□ 0.41
CLN3-241ENST00000635861 MAGEB16A2A368 324 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 E5RI56 91 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 TXNDC9O14530 226 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 MAP2K7O14733 419 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 NIPSNAP2O75323 286 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 CCNDBP1O95273 360 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 CATP04040 527 aaKnown RBP17.57■□□□□ 0.4
CLN3-241ENST00000635861 CCDC175P0C221 793 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 ZGLP1P0C6A0 271 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 RNF224P0DH78 156 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 PKMP14618 531 aaKnown RBP17.57■□□□□ 0.4
CLN3-241ENST00000635861 ACPPP15309 386 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 CHRM3P20309 590 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 KLC1Q07866 573 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 ZNF169Q14929 603 aaPredicted RBP17.57■□□□□ 0.4
CLN3-241ENST00000635861 TLR1Q15399 786 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms