RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 IL17FQ96PD4 163 aa14.45□□□□□ -0.1
CUX1-215ENST00000556210 KCNC2Q96PR1 638 aa14.45□□□□□ -0.1
CUX1-215ENST00000556210 RBM38Q9H0Z9 239 aaKnown RBP14.45□□□□□ -0.1
CUX1-215ENST00000556210 GPRC5BQ9NZH0 403 aa14.45□□□□□ -0.1
CUX1-215ENST00000556210 UTS2RQ9UKP6 389 aa14.45□□□□□ -0.1
CUX1-215ENST00000556210 TMEM98Q9Y2Y6 226 aa14.45□□□□□ -0.1
CUX1-215ENST00000556210 TPRKBQ9Y3C4 175 aa14.45□□□□□ -0.1
CUX1-215ENST00000556210 AGXTP21549 392 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 DNAJB1P25685 340 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 TPTEP56180 551 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 DNASE1L3Q13609 305 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 GDPD4Q6W3E5 623 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 CHPFQ8IZ52 775 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 PGBD3Q8N328 593 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 LILRA3Q8N6C8 439 aaPredicted RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 HMGCLL1Q8TB92 370 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 EXOSC8Q96B26 276 aaKnown RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 SLCO4A1Q96BD0 722 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 TCEAL4Q96EI5 215 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 MYRFLQ96LU7 910 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 HEPHQ9BQS7 1158 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 CCL26Q9Y258 94 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 UMPSP11172 480 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 ATP1B2P14415 290 aaPredicted RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 ALOX12P18054 663 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 ZFAND4Q86XD8 727 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 TEX26Q8N6G2 289 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 SLAIN1Q8ND83 568 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 RHBGQ9H310 441 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 MAGEE1Q9HCI5 957 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 EQTNQ9NQ60 294 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 ACSL6Q9UKU0 697 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 PCDHB14Q9Y5E9 798 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 ALPPL2P10696 532 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 ACRV1P26436 265 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 PTGER1P34995 402 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 RAB15P59190 212 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 HSPB3Q12988 150 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 RCAN2Q14206 197 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 DEF8Q6ZN54 512 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 DCDC5Q6ZRR9 648 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 NETO1Q8TDF5 533 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 XAGE5Q8WWM1 108 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 TSEN34Q9BSV6 310 aaKnown RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 WDR12Q9GZL7 423 aaKnown RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 C8orf4Q9NR00 106 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 VPS29Q9UBQ0 182 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 DNAJB9Q9UBS3 223 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 TGM5O43548 720 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 MFN2O95140 757 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 HPCAL1P37235 193 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 CD97P48960 835 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 MED22Q15528 200 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 NHSL2Q5HYW2 709 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 RSBN1Q5VWQ0 802 aaPredicted RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 CXorf57Q6NSI4 855 aaKnown RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 TTC29Q8NA56 475 aaPredicted RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 PXYLP1Q8TE99 480 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 C2orf15Q8WU43 125 aaKnown RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 SUSD6Q92537 303 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 PKMYT1Q99640 499 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 RBM4BQ9BQ04 359 aaKnown RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 YIPF4Q9BSR8 244 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 DUSP26Q9BV47 211 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 RBM4Q9BWF3 364 aaKnown RBP14.44□□□□□ -0.1
CUX1-215ENST00000556210 TMCC3Q9ULS5 477 aa14.44□□□□□ -0.1
CUX1-215ENST00000556210 MMP20O60882 483 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 EPHX1P07099 455 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 CSTF3Q12996 717 aaKnown RBP14.43□□□□□ -0.1
CUX1-215ENST00000556210 INTS11Q5TA45 600 aaKnown RBP14.43□□□□□ -0.1
CUX1-215ENST00000556210 ZNF773Q6PK81 442 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 TBPL2Q6SJ96 375 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 MMAAQ8IVH4 418 aaKnown RBP14.43□□□□□ -0.1
CUX1-215ENST00000556210 PPCDCQ96CD2 204 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 VPS35Q96QK1 796 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 HTATIP2Q9BUP3 242 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 PRDM8Q9NQV8 689 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 ITGB1BP2Q9UKP3 347 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 LATO43561 262 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 ASNA1O43681 348 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 ATG13O75143 517 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 RASAL1O95294 804 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 LAG3P18627 525 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 CCR7P32248 378 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 MAP2K4P45985 399 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 AGTRAPQ6RW13 159 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 HIPK1Q86Z02 1210 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 PHF10Q8WUB8 498 aaKnown RBP14.43□□□□□ -0.1
CUX1-215ENST00000556210 RXRGP48443 463 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 UGT3A2Q3SY77 523 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 TPGS2Q68CL5 300 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 Q6ZNX1 250 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 FAM9CQ8IZT9 166 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 USE1Q9NZ43 259 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 TMEM9Q9P0T7 183 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 FZD4Q9ULV1 537 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 CLCA2Q9UQC9 943 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 PCDHB3Q9Y5E6 796 aa14.43□□□□□ -0.1
CUX1-215ENST00000556210 ATG2BQ96BY7 2078 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms