RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 COQ3Q9NZJ6 369 aa10.39□□□□□ -0.75
DDX41-216ENST00000513562 TRPC4Q9UBN4 977 aa10.39□□□□□ -0.75
DDX41-216ENST00000513562 ZC3H7BQ9UGR2 993 aaKnown RBP10.39□□□□□ -0.75
DDX41-216ENST00000513562 PPT2Q9UMR5 302 aa10.39□□□□□ -0.75
DDX41-216ENST00000513562 NPIPA1Q9UND3 350 aa10.39□□□□□ -0.75
DDX41-216ENST00000513562 AAR2Q9Y312 384 aaKnown RBP10.39□□□□□ -0.75
DDX41-216ENST00000513562 CNTRLQ7Z7A1 2325 aa10.39□□□□□ -0.75
DDX41-216ENST00000513562 CCDC88CQ9P219 2028 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 LOC105369274A0A096LPK9 316 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 LOC102723532A0A0G2JNH3 316 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 RASGRF2O14827 1237 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 ASNA1O43681 348 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 SLCO2B1O94956 709 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 TSPAN12O95859 305 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 RPN2P04844 631 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 HEXBP07686 556 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 EFNA3P52797 238 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 EMP3P54852 163 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 PPP2R2AP63151 447 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 HSF1Q00613 529 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 TUBA3CQ13748 450 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 PRTGQ2VWP7 1150 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 KAZNQ674X7 775 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 ITPRIPL1Q6GPH6 555 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 TUBA3EQ6PEY2 450 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 C3P1Q6ZMU1 363 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 TMEM200AQ86VY9 491 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 DMRTC2Q8IXT2 367 aaPredicted RBP10.38□□□□□ -0.75
DDX41-216ENST00000513562 OR4N4Q8N0Y3 316 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 BEST3Q8N1M1 668 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 GHDCQ8N2G8 530 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 AMER3Q8N944 861 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 DNAAF3Q8N9W5 541 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 SLC35G2Q8TBE7 412 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 NRGNQ92686 78 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 HAUS1Q96CS2 278 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 MVB12AQ96EY5 273 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 BPIFA3Q9BQP9 254 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 HES7Q9BYE0 225 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 GSX1Q9H4S2 264 aaPredicted RBP10.38□□□□□ -0.75
DDX41-216ENST00000513562 ARNT2Q9HBZ2 717 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 KLHL1Q9NR64 748 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 NLE1Q9NVX2 485 aaPredicted RBP10.38□□□□□ -0.75
DDX41-216ENST00000513562 STOX2Q9P2F5 926 aaPredicted RBP10.38□□□□□ -0.75
DDX41-216ENST00000513562 KCNN3Q9UGI6 736 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 CIDEBQ9UHD4 219 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 FEZ2Q9UHY8 353 aaPredicted RBP10.38□□□□□ -0.75
DDX41-216ENST00000513562 CDC14AQ9UNH5 594 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 ASB1Q9Y576 335 aa10.38□□□□□ -0.75
DDX41-216ENST00000513562 A0A0J9YVX5 310 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 A8MUI8 341 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 PRRG2O14669 202 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 FFAR3O14843 346 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 GPR42O15529 346 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 PRPF4O43172 522 aaKnown RBP eCLIP10.37□□□□□ -0.75
DDX41-216ENST00000513562 ZNHIT1O43257 154 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 NRP2O60462 931 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 EIF2S1P05198 315 aaKnown RBP10.37□□□□□ -0.75
DDX41-216ENST00000513562 OR56A5P0C7T3 313 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 ERVK-10P10266 1014 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 PSMB4P28070 264 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 MSX1P28360 303 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 RBL1P28749 1068 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 EEF1DP29692 281 aaKnown RBP10.37□□□□□ -0.75
DDX41-216ENST00000513562 SLC26A3P40879 764 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 FOLH1Q04609 750 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 FOXD4Q12950 439 aaPredicted RBP10.37□□□□□ -0.75
DDX41-216ENST00000513562 SLC18A3Q16572 532 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 ACER2Q5QJU3 275 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 PLAG1Q6DJT9 500 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 H3F3CQ6NXT2 135 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 UNC5DQ6UXZ4 953 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 FGD2Q7Z6J4 655 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 VRK3Q8IV63 474 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 CDKN2AIPNLQ96HQ2 116 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 CABS1Q96KC9 395 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 ZNF354BQ96LW1 612 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 TBL1YQ9BQ87 522 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 ZNF559Q9BR84 538 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 RAB11FIP5Q9BXF6 653 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 NAT10Q9H0A0 1025 aaKnown RBP10.37□□□□□ -0.75
DDX41-216ENST00000513562 MKKSQ9NPJ1 570 aaPredicted RBP10.37□□□□□ -0.75
DDX41-216ENST00000513562 IMPACTQ9P2X3 320 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 MKL2Q9ULH7 1088 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 CAPN11Q9UMQ6 739 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 RPH3AQ9Y2J0 694 aaPredicted RBP10.37□□□□□ -0.75
DDX41-216ENST00000513562 ANKRD12Q6UB98 2062 aa10.37□□□□□ -0.75
DDX41-216ENST00000513562 hCG_1818297A0A087WSY0 165 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 SEC24DO94855 1032 aaPredicted RBP10.36□□□□□ -0.75
DDX41-216ENST00000513562 C8orf89P0DMQ9 161 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 TNNT1P13805 278 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 FOSL1P15407 271 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 CD46P15529 392 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 PSMB5P28074 263 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 CD96P40200 585 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 SLC1A1P43005 524 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 CSE1LP55060 971 aaKnown RBP10.36□□□□□ -0.75
DDX41-216ENST00000513562 TYRO3Q06418 890 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 PRPSAP1Q14558 356 aa10.36□□□□□ -0.75
DDX41-216ENST00000513562 OR1C1Q15619 314 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms