RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 ICE2Q659A1 982 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 TTC19Q6DKK2 380 aaPredicted RBP13.68□□□□□ -0.22
RNF4-208ENST00000507247 PIP4P1Q86T03 277 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 TRIM73Q86UV7 250 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 OR52B6Q8NGF0 335 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 TRPC4APQ8TEL6 797 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 PPP4R1Q8TF05 950 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 SREK1Q8WXA9 508 aaKnown RBP13.68□□□□□ -0.22
RNF4-208ENST00000507247 NEIL2Q969S2 332 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 MAGEB18Q96M61 343 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 MIPEPQ99797 713 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 NOL11Q9H8H0 719 aaKnown RBP13.68□□□□□ -0.22
RNF4-208ENST00000507247 IPPKQ9H8X2 491 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 EVA1BQ9NVM1 165 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 CUEDC1Q9NWM3 386 aaPredicted RBP13.68□□□□□ -0.22
RNF4-208ENST00000507247 ANGPTL3Q9Y5C1 460 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 PCDHB11Q9Y5F2 797 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 ENTPD2Q9Y5L3 495 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 UNC13CQ8NB66 2214 aa13.68□□□□□ -0.22
RNF4-208ENST00000507247 FRYLO94915 3013 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 ADAMTS20P59510 1910 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 EP300Q09472 2414 aaPredicted RBP13.67□□□□□ -0.22
RNF4-208ENST00000507247 IGKV1-8A0A0C4DH67 115 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 A0A1W2PQM1 296 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 TMEM114B3SHH9 223 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 E7EQ34 232 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 UBFD1O14562 309 aaKnown RBP13.67□□□□□ -0.22
RNF4-208ENST00000507247 DUX1O43812 170 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 SNNO75324 88 aaPredicted RBP13.67□□□□□ -0.22
RNF4-208ENST00000507247 CDH1P12830 882 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 ID4P47928 161 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 ACADVLP49748 655 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 LIMK1P53667 647 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 GFERP55789 205 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 TRAF3Q13114 568 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 PRKAA1Q13131 559 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 STX3Q13277 289 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 RBBP7Q16576 425 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 CATSPEREQ5SY80 951 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 KIAA1614Q5VZ46 1190 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 ARMC6Q6NXE6 501 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 KLHL35Q6PF15 583 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 SPESP1Q6UW49 350 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 TRIM42Q8IWZ5 723 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 DCBLD1Q8N8Z6 715 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 OR2L3Q8NG85 312 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 RAB3IL1Q8TBN0 382 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 NCSTNQ92542 709 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 PRR11Q96HE9 360 aaPredicted RBP13.67□□□□□ -0.22
RNF4-208ENST00000507247 AHCYL2Q96HN2 611 aaKnown RBP13.67□□□□□ -0.22
RNF4-208ENST00000507247 CNDP1Q96KN2 507 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 CDK15Q96Q40 435 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 SORT1Q99523 831 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 HAUS8Q9BT25 410 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 SHCBP1LQ9BZQ2 653 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 DRC3Q9H069 523 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 PCBD2Q9H0N5 130 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 EPB41L1Q9H4G0 881 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 TNFRSF12AQ9NP84 129 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 SLC6A20Q9NP91 592 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 GPRC5BQ9NZH0 403 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 TMEM9Q9P0T7 183 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 ZNF225Q9UK10 706 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 POMT2Q9UKY4 750 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 DYRK1BQ9Y463 629 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 KCNE2Q9Y6J6 123 aa13.67□□□□□ -0.22
RNF4-208ENST00000507247 KLF11O14901 512 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 CAPN5O15484 640 aaPredicted RBP13.66□□□□□ -0.22
RNF4-208ENST00000507247 NRP2O60462 931 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 RPLP0P05388 317 aaKnown RBP13.66□□□□□ -0.22
RNF4-208ENST00000507247 CD22P20273 847 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 GRK2P25098 689 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 SLC1A6P48664 564 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 PIK3CGP48736 1102 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 PPM1FP49593 454 aaPredicted RBP13.66□□□□□ -0.22
RNF4-208ENST00000507247 ABCE1P61221 599 aaKnown RBP13.66□□□□□ -0.22
RNF4-208ENST00000507247 NAA20P61599 178 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 SH3BP2P78314 561 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 PRDX1Q06830 199 aaKnown RBP13.66□□□□□ -0.22
RNF4-208ENST00000507247 LCP2Q13094 533 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 SF1Q15637 639 aaKnown RBP13.66□□□□□ -0.22
RNF4-208ENST00000507247 SLC5A12Q1EHB4 618 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 ARL13AQ5H913 290 aaPredicted RBP13.66□□□□□ -0.22
RNF4-208ENST00000507247 ATG16L1Q676U5 607 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 IRGCQ6NXR0 463 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 SLCO4C1Q6ZQN7 724 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 RGS9BPQ6ZS82 235 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 USP53Q70EK8 1073 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 TMPRSS9Q7Z410 1059 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 TMPRSS11BQ86T26 416 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 SYVN1Q86TM6 617 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 C17orf64Q86WR6 236 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 LRRC8CQ8TDW0 803 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 AGAP11Q8TF27 550 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 SLC5A11Q8WWX8 675 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 SLC22A18Q96BI1 424 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 ZNF382Q96SR6 550 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 NUDT22Q9BRQ3 303 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 NTMT1Q9BV86 223 aa13.66□□□□□ -0.22
RNF4-208ENST00000507247 RAB33BQ9H082 229 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms