RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	TRIM56	Q9BRZ2	755 aa	Known RBP	8.48	□□□□□ -1.05
USP4-213	ENST00000488520	SSBP4	Q9BWG4	385 aa	Predicted RBP	8.48	□□□□□ -1.05
USP4-213	ENST00000488520	TWSG1	Q9GZX9	223 aa		8.48	□□□□□ -1.05
USP4-213	ENST00000488520	CDC42EP4	Q9H3Q1	356 aa	Known RBP	8.48	□□□□□ -1.05
USP4-213	ENST00000488520	OSGEPL1	Q9H4B0	414 aa		8.48	□□□□□ -1.05
USP4-213	ENST00000488520	STN1	Q9H668	368 aa	Known RBP	8.48	□□□□□ -1.05
USP4-213	ENST00000488520	SARS2	Q9NP81	518 aa	Known RBP	8.48	□□□□□ -1.05
USP4-213	ENST00000488520	FBXO6	Q9NRD1	293 aa	Predicted RBP	8.48	□□□□□ -1.05
USP4-213	ENST00000488520	KLC4	Q9NSK0	619 aa		8.48	□□□□□ -1.05
USP4-213	ENST00000488520	ARGLU1	Q9NWB6	273 aa	Predicted RBP	8.48	□□□□□ -1.05
USP4-213	ENST00000488520	MOCS1	Q9NZB8	636 aa		8.48	□□□□□ -1.05
USP4-213	ENST00000488520	NINJ2	Q9NZG7	142 aa		8.48	□□□□□ -1.05
USP4-213	ENST00000488520	IL1RAPL1	Q9NZN1	696 aa		8.48	□□□□□ -1.05
USP4-213	ENST00000488520	ACSL5	Q9ULC5	683 aa		8.48	□□□□□ -1.05
USP4-213	ENST00000488520	POLH	Q9Y253	713 aa		8.48	□□□□□ -1.05
USP4-213	ENST00000488520	OAS3	Q9Y6K5	1087 aa	Known RBP	8.48	□□□□□ -1.05
USP4-213	ENST00000488520	C17orf113	A0A1B0GUU1	675 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	TCRBV9S1A1T	A0A576	114 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	PIPSL	A2A3N6	862 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	MGAT4D	A6NG13	374 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	OR5K4	A6NMS3	321 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	POC1B-GALNT4	F8VUJ3	575 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	IFRD1	O00458	451 aa	Predicted RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	CHUK	O15111	745 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	OR1I1	O60431	355 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	DNAJC6	O75061	913 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	VPS26A	O75436	327 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	RFPL1	O75677	317 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	AHSG	P02765	367 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	APOA4	P06727	396 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	INHBA	P08476	426 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	H2AFB1	P0C5Y9	115 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	H2AFB2	P0C5Z0	115 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	FAM153B	P0C7A2	387 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	PKM	P14618	531 aa	Known RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	SAT1	P21673	171 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	EPHA1	P21709	976 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	RPS3	P23396	243 aa	Known RBP eCLIP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	SKIV2L2	P42285	1042 aa	Known RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	SLC1A2	P43004	574 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	LEPR	P48357	1165 aa	Known RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	VSNL1	P62760	191 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	IFFO1	Q0D2I5	559 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	CHAF1B	Q13112	559 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	BRD3	Q15059	726 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	TTLL9	Q3SXZ7	439 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	FAM153C	Q494X1	144 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	TTC23L	Q6PF05	361 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	IYD	Q6PHW0	289 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	PACS1	Q6VY07	963 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	TAOK1	Q7L7X3	1001 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	OTOA	Q7RTW8	1153 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	SLC9B2	Q86UD5	537 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	DENND6A	Q8IWF6	608 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	AGGF1	Q8N302	714 aa	eCLIP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	CLDN19	Q8N6F1	224 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	C2CD4A	Q8NCU7	369 aa	Predicted RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	GALNT11	Q8NCW6	608 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	OR2L2	Q8NH16	312 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	UHMK1	Q8TAS1	419 aa	Known RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	SKA2	Q8WVK7	121 aa	Predicted RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	ASZ1	Q8WWH4	475 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	ELMO1	Q92556	727 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	TGM7	Q96PF1	710 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	OR6C1	Q96RD1	312 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	CPNE1	Q99829	537 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	TIMM29	Q9BSF4	260 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	TRIM55	Q9BYV6	548 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	AKTIP	Q9H8T0	292 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	SIDT1	Q9NXL6	827 aa	Known RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	TAS2R13	Q9NYV9	303 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	MARCH4	Q9P2E8	410 aa	Predicted RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	FAM8A1	Q9UBU6	413 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	TMPRSS11E	Q9UL52	423 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	CORO1C	Q9ULV4	474 aa	Predicted RBP	8.47	□□□□□ -1.05
USP4-213	ENST00000488520	DNAJC16	Q9Y2G8	782 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	CROCC	Q5TZA2	2017 aa		8.47	□□□□□ -1.05
USP4-213	ENST00000488520	CNTRL	Q7Z7A1	2325 aa		8.46	□□□□□ -1.05
USP4-213	ENST00000488520	IGLV3-16	A0A075B6K0	115 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	EXOC1L	A0A1B0GW35	172 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	PABPN1L	A6NDY0	278 aa	Known RBP	8.46	□□□□□ -1.06
USP4-213	ENST00000488520	ENO4	A6NNW6	628 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	PDZK1P1	A8MUH7	402 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520		F8W735	103 aa	Predicted RBP	8.46	□□□□□ -1.06
USP4-213	ENST00000488520	LIN7A	O14910	233 aa	Predicted RBP	8.46	□□□□□ -1.06
USP4-213	ENST00000488520	GPR39	O43194	453 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	CREG1	O75629	220 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	RASSF9	O75901	435 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	F3	P13726	295 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	AMD1	P17707	334 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	GP5	P40197	560 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	SERPINB9	P50453	376 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	CSE1L	P55060	971 aa	Known RBP	8.46	□□□□□ -1.06
USP4-213	ENST00000488520	ADAR	P55265	1226 aa	Known RBP	8.46	□□□□□ -1.06
USP4-213	ENST00000488520	GPX6	P59796	221 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	MAP7	Q14244	749 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	SLC29A2	Q14542	456 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	SEMA3A	Q14563	771 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	TYSND1	Q2T9J0	566 aa		8.46	□□□□□ -1.06
USP4-213	ENST00000488520	EIF2S3L	Q2VIR3	472 aa	Known RBP	8.46	□□□□□ -1.06

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms