RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 H7C417 338 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 GADD45GO95257 159 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 RETP07949 1114 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ITGA3P26006 1051 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 TAGLN2P37802 199 aaKnown RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 ART1P52961 327 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 CDK10Q15131 360 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 UAP1L1Q3KQV9 507 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 PLPPR4Q7Z2D5 763 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 FBXO22Q8NEZ5 403 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ZNF354BQ96LW1 612 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 MAGEH1Q9H213 219 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 COQ10BQ9H8M1 238 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 MARCH2Q9P0N8 246 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 TMEM59LQ9UK28 342 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 COQ9O75208 318 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 MT-ND1P03886 318 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 GDI2P50395 445 aaKnown RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 CDH13P55290 713 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ARF5P84085 180 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SLC18A2Q05940 514 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 CAPSQ13938 189 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SLX4IPQ5VYV7 408 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 LRRC58Q96CX6 371 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 HYKKA2RU49 373 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 NUDT1P36639 197 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 CDKN2BP42772 138 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 TGFB2P61812 414 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 KCTD18Q6PI47 426 aaPredicted RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 PMF1-BGLAPU3KQ54 211 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SEC16AO15027 2179 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 GTPBP1O00178 669 aaKnown RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 SCAMP1O15126 338 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 CPNE3O75131 537 aaKnown RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 CHRM1P11229 460 aaPredicted RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 RBMXP38159 391 aaKnown RBP7.03□□□□□ -1.28
VPS53-204ENST00000437048 GTF2H2Q13888 395 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 GTF2H2CQ6P1K8 395 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 MON1AQ86VX9 555 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SCUBE3Q8IX30 993 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ASB12Q8WXK4 309 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 HS6ST2Q96MM7 605 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ANKRD60Q9BZ19 345 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SDCBP2Q9H190 292 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SLCO5A1Q9H2Y9 848 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 PRELID3BQ9Y3B1 194 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ESPL1Q14674 2120 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 FAM230AA0A1W2PPH8 454 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 CAPN14A8MX76 684 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 TTC34A8MYJ7 566 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 CXCL11O14625 94 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 GABBR2O75899 941 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 MICAL2O94851 1124 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 JAM2P57087 298 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 TBC1D25Q3MII6 688 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 LFNGQ8NES3 379 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 RHEBL1Q8TAI7 183 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 OR2M2Q96R28 347 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 TPK1Q9H3S4 243 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 ERVK-5Q9HDB9 667 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 PCDHB11Q9Y5F2 797 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 CHD1O14646 1710 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 OR6C75A6NL08 312 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SLC37A4O43826 429 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 TNNI3P19429 210 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 MAP2K4P45985 399 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 EMX2Q04743 252 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 GAD2Q05329 585 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 GLT8D1Q68CQ7 371 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 RNF148Q8N7C7 305 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SCGB1C1Q8TD33 95 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 FCRL4Q96PJ5 515 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 HAPLN3Q96S86 360 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 UFSP2Q9NUQ7 469 aa7.03□□□□□ -1.28
VPS53-204ENST00000437048 SC5DO75845 299 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 CSF1P09603 554 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 GJA1P17302 382 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 CHRNB2P17787 502 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 MAOAP21397 527 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 UBA1P22314 1058 aaKnown RBP7.02□□□□□ -1.28
VPS53-204ENST00000437048 ECI1P42126 302 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 SPP2Q13103 211 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 MADCAM1Q13477 382 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 SUSD4Q5VX71 490 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 AWAT2Q6E213 333 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 KIAA1161Q6NSJ0 714 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 SLC30A10Q6XR72 485 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 ZNF280BQ86YH2 543 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 GHDCQ8N2G8 530 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 FBXO7Q9Y3I1 522 aa7.02□□□□□ -1.28
VPS53-204ENST00000437048 BHMG1C9JSJ3 638 aaPredicted RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 ZNF823P16415 610 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 PSMB4P28070 264 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 OXTRP30559 389 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 SNTA1Q13424 505 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 Q3C1V9 767 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 MGAT5BQ3V5L5 792 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 C19orf35Q6ZS72 473 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 TMEM139Q8IV31 216 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 MINDY1Q8N5J2 469 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms