RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 KLHL20Q9Y2M5 609 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 ASB1Q9Y576 335 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 EPG5Q9HCE0 2579 aa11.96□□□□□ -0.5
USP40-205ENST00000430158 ZNF839A8K0R7 811 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 CDRT15L2A8MXV6 281 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 MAP2K7O14733 419 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 NRP2O60462 931 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 GUCA1CO95843 209 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 HIST1H2AGP0C0S8 130 aaPredicted RBP11.95□□□□□ -0.5
USP40-205ENST00000430158 ITIH1P19827 911 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 HIST1H2ADP20671 130 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 CDH3P22223 829 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 TBPL1P62380 186 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 HSD11B2P80365 405 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 SLC18A2Q05940 514 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 PRDX1Q06830 199 aaKnown RBP11.95□□□□□ -0.5
USP40-205ENST00000430158 KCNAB1Q14722 419 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 FAM83EQ2M2I3 478 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 PTCHD3Q3KNS1 767 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 C3orf38Q5JPI3 329 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 ICE2Q659A1 982 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 ZNF425Q6IV72 752 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 FIGLAQ6QHK4 219 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 TRABD2AQ86V40 505 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 RIBC1Q8N443 379 aaPredicted RBP11.95□□□□□ -0.5
USP40-205ENST00000430158 RAB42Q8N4Z0 105 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 C19orf47Q8N9M1 422 aaKnown RBP11.95□□□□□ -0.5
USP40-205ENST00000430158 ATL1Q8WXF7 558 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 ZUFSPQ96AP4 578 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 CABS1Q96KC9 395 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 HIST1H2AHQ96KK5 128 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 ZIM3Q96PE6 472 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 CMKLR1Q99788 373 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 MIPEPQ99797 713 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 HIST1H2AJQ99878 128 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 H2AFJQ9BTM1 129 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 TRIM54Q9BYV2 358 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 B3GNT4Q9C0J1 378 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 KLHL25Q9H0H3 589 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 FBXO8Q9NRD0 319 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 DKK4Q9UBT3 224 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 PILRAQ9UKJ1 303 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 EMCNQ9ULC0 261 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 PCDHB11Q9Y5F2 797 aa11.95□□□□□ -0.5
USP40-205ENST00000430158 USP24Q9UPU5 2620 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 OR2A25A4D2G3 310 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 SMIM23A6NLE4 172 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 EFCAB7A8K855 629 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 C9orf172C9J069 976 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 GOLGA8RI6L899 631 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 UBXN8O00124 270 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 AGRPO00253 132 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 PRAMEF4O60810 478 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 CTSVO60911 334 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 RASSF9O75901 435 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 MT-ND3P03897 115 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 CTSBP07858 339 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 ANXA5P08758 320 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 EBLN1P0CF75 366 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 MAGP20916 626 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 CSTF2P33240 577 aaKnown RBP eCLIP11.94□□□□□ -0.5
USP40-205ENST00000430158 MLLT3P42568 568 aaPredicted RBP11.94□□□□□ -0.5
USP40-205ENST00000430158 GLRBP48167 497 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 PPM1FP49593 454 aaPredicted RBP11.94□□□□□ -0.5
USP40-205ENST00000430158 HNMTP50135 292 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 GABREP78334 506 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 RELAQ04206 551 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 SF1Q15637 639 aaKnown RBP11.94□□□□□ -0.5
USP40-205ENST00000430158 PRAMEF9Q5VWM5 478 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 SULT1C3Q6IMI6 304 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 FBXO42Q6P3S6 717 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 LCTLQ6UWM7 567 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 CDHR3Q6ZTQ4 885 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 LCA5Q86VQ0 697 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 PAQR7Q86WK9 346 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 ABHD11Q8NFV4 315 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 UBTD2Q8WUN7 234 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 PYCR2Q96C36 320 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 ZNF501Q96CX3 271 aaPredicted RBP11.94□□□□□ -0.5
USP40-205ENST00000430158 ZNF285Q96NJ3 590 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 ACAT2Q9BWD1 397 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 APMAPQ9HDC9 416 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 PCMTD2Q9NV79 361 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 CUEDC1Q9NWM3 386 aaPredicted RBP11.94□□□□□ -0.5
USP40-205ENST00000430158 NUDT4Q9NZJ9 180 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 TMEM216Q9P0N5 145 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 TAC3Q9UHF0 121 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 PCDHGA3Q9Y5H0 932 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 CELSR3Q9NYQ7 3312 aa11.94□□□□□ -0.5
USP40-205ENST00000430158 CCDC88CQ9P219 2028 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 TLDC2A0PJX2 215 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 NVLO15381 856 aaKnown RBP11.93□□□□□ -0.5
USP40-205ENST00000430158 BRINP1O60477 761 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 ERLIN1O75477 346 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 GSTA1P08263 222 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 RBP1P09455 135 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 FGF5P12034 268 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 EPORP19235 508 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 CCND1P24385 295 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 RPA3P35244 121 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms