RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 ELP4Q96EB1 424 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 AHCYL2Q96HN2 611 aaKnown RBP11.5□□□□□ -0.57
NPHP4-202ENST00000378161 ASB2Q96Q27 587 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 PARK7Q99497 189 aaKnown RBP11.5□□□□□ -0.57
NPHP4-202ENST00000378161 CEP41Q9BYV8 373 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 BCL2L14Q9BZR8 327 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 ZFR2Q9UPR6 939 aaKnown RBP11.5□□□□□ -0.57
NPHP4-202ENST00000378161 PIN4Q9Y237 131 aaKnown RBP11.5□□□□□ -0.57
NPHP4-202ENST00000378161 SNED1Q8TER0 1413 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 DHX15O43143 795 aaKnown RBP11.5□□□□□ -0.57
NPHP4-202ENST00000378161 ANXA9O76027 345 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 ATG12O94817 140 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 SNAPINO95295 136 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 FGF3P11487 239 aaPredicted RBP11.5□□□□□ -0.57
NPHP4-202ENST00000378161 RPS12P25398 132 aaKnown RBP11.5□□□□□ -0.57
NPHP4-202ENST00000378161 ZNF143P52747 638 aaPredicted RBP11.5□□□□□ -0.57
NPHP4-202ENST00000378161 CTBSQ01459 385 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 MGAT3Q09327 533 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 GRB14Q14449 540 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 SIX1Q15475 284 aaPredicted RBP11.5□□□□□ -0.57
NPHP4-202ENST00000378161 CHRNA6Q15825 494 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 SV2CQ496J9 727 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 IL17RCQ8NAC3 791 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 IPMKQ8NFU5 416 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 OR5B17Q8NGF7 314 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 RNF157Q96PX1 679 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 NKIRAS2Q9NYR9 191 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 COL20A1Q9P218 1284 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 HSPE1-MOB4S4R3N1 261 aa11.5□□□□□ -0.57
NPHP4-202ENST00000378161 TERTO14746 1132 aaKnown RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 NDUFA2O43678 99 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 IL33O95760 270 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 MOCS2O96007 188 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 SERPINA3P01011 423 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 DNTTP04053 509 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 HNRNPLP14866 589 aaKnown RBP eCLIP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 PAICSP22234 425 aaKnown RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 DCAF4L1Q3SXM0 396 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 PDSS1Q5T2R2 415 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 ETFRF1Q6IPR1 90 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 RASGRP3Q8IV61 690 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 SKA2Q8WVK7 121 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 RPL3LQ92901 407 aaKnown RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 TBC1D20Q96BZ9 403 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 TMEM68Q96MH6 324 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 GTF2IRD1Q9UHL9 959 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 WDR27A2RRH5 827 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 AP3D1O14617 1153 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 MDM4O15151 490 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 TP73O15350 636 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 CABYRO75952 493 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 SUPT7LO94864 414 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 LALBAP00709 142 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 CLTBP09497 229 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 TCF3P15923 654 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 LIMK1P53667 647 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 LTB4RQ15722 352 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 UGCGQ16739 394 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 CYBRD1Q53TN4 286 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 STXBP5Q5T5C0 1151 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 PGAP3Q96FM1 320 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 CPNE1Q99829 537 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 NKX6-2Q9C056 277 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 DNAJB9Q9UBS3 223 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 CSNK1G3Q9Y6M4 447 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 HACD1B0YJ81 288 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 MID1O15344 667 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 RAP2AP10114 183 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 PEPDP12955 493 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 UGT8Q16880 541 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 ZNF484Q5JVG2 852 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 SCN4BQ8IWT1 228 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 TRMT10AQ8TBZ6 339 aaKnown RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 DTD1Q8TEA8 209 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 COPS5Q92905 334 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 ZNF275Q9NSD4 429 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 OPTCQ9UBM4 332 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 TNPO3Q9Y5L0 923 aaKnown RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 A0A0J9YYE9 177 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 UBA6A0AVT1 1052 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 PRORSD1PA6NEY8 169 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 ISM1B1AKI9 464 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 TRIM77I1YAP6 450 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 PSMD9O00233 223 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 CBX4O00257 560 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 ITGB1P05556 798 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 ACSM4P0C7M7 580 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 GADD45AP24522 165 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 PTAFRP25105 342 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 TGFBR2P37173 567 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 TAF6P49848 677 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 ALKBH1Q13686 389 aaKnown RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 EXOSC2Q13868 293 aaKnown RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 KDELC2Q7Z4H8 507 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 ZFP82Q8N141 532 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 SFT2D1Q8WV19 159 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 VRK1Q99986 396 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-202ENST00000378161 FAM118AQ9NWS6 357 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 CNTN3Q9P232 1028 aa11.49□□□□□ -0.57
NPHP4-202ENST00000378161 CPA4Q9UI42 421 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms