RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NOTCH4Q99466 2003 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 GNGT2O14610 69 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 IL1RNP18510 177 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 XPAP23025 273 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 HNRNPFP52597 415 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 PPP2R2BQ00005 443 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 ZNF33BQ06732 778 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 CSTF3Q12996 717 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 SLC14A1Q13336 389 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 PMS2P3Q13401 168 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 DOC2AQ14183 400 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 ZNF284Q2VY69 593 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 CCSMST1Q4G0I0 132 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 DOK6Q6PKX4 331 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 CLVS1Q8IUQ0 354 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 SVOPLQ8N434 492 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 IL23AQ9NPF7 189 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 IFT80Q9P2H3 777 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 DKK3Q9UBP4 350 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 E7EQ34 232 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 QSOX1O00391 747 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 ELK4P28324 431 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 PREPP48147 710 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 HLCSP50747 726 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 CTBSQ01459 385 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 LDLRAP1Q5SW96 308 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 AGTRAPQ6RW13 159 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 OR7A2PQ8NGA2 310 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 GLYATL1Q969I3 302 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 TMEM159Q96B96 161 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 VPS35Q96QK1 796 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 USE1Q9NZ43 259 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 STOX2Q9P2F5 926 aaPredicted RBP20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 VPS29Q9UBQ0 182 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 NOBOXO60393 691 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 C1QCP02747 245 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 NAE1Q13564 534 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 MYBPC3Q14896 1274 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 UGT8Q16880 541 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 SYTL3Q4VX76 610 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 PRSS36Q5K4E3 855 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 ANKRD34AQ69YU3 496 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 LIPIQ6XZB0 460 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 CHST15Q7LFX5 561 aaPredicted RBP20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 TMEM179BQ7Z7N9 219 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 SYT12Q8IV01 421 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 ADHFE1Q8IWW8 467 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 ZNF366Q8N895 744 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 PJA1Q8NG27 643 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 ISOC1Q96CN7 298 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 OTUB2Q96DC9 234 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 PYURFQ96I23 114 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 CCDC138Q96M89 665 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 MTERF1Q99551 399 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 REXO4Q9GZR2 422 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 SPATA6Q9NWH7 488 aaPredicted RBP20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 FAM118AQ9NWS6 357 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 CIDEBQ9UHD4 219 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 FBXO10Q9UK96 956 aa20.19■□□□□ 0.82
CCDC88B-203ENST00000359902 SLC5A10A0PJK1 596 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 RECQL5O94762 991 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 MMP12P39900 470 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 TRPC1P48995 793 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 TMEM115Q12893 351 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 PPP1R8Q12972 351 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 CBX2Q14781 532 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 DUOXA1Q1HG43 343 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 CES5AQ6NT32 575 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 ZCCHC7Q8N3Z6 543 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 ATL1Q8WXF7 558 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 NELL1Q92832 810 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 GLMNQ92990 594 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 OR4K3Q96R72 315 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 MBOAT4Q96T53 435 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 POLR1BQ9H9Y6 1135 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 CXorf21Q9HAI6 301 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 TIMMDC1Q9NPL8 285 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 EBF1Q9UH73 591 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 SOBPA7XYQ1 873 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 PRMT3O60678 531 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 SCN2BO60939 215 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 ATG13O75143 517 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 PRLHRP49683 370 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 WNT3P56703 355 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 SRSF11Q05519 484 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 GRIN2CQ14957 1233 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 SPESP1Q6UW49 350 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 KCTD8Q6ZWB6 473 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 OR10Q1Q8NGQ4 319 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 POF1BQ8WVV4 589 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 POP5Q969H6 163 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 AP2M1Q96CW1 435 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 MED8Q96G25 268 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 LRIG1Q96JA1 1093 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 RBM4BQ9BQ04 359 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 CCM2Q9BSQ5 444 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 RBM4Q9BWF3 364 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 AMBRA1Q9C0C7 1298 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 ERVK-11Q9UQG0 969 aa20.18■□□□□ 0.82
CCDC88B-203ENST00000359902 ZNF701M0R085 212 aaPredicted RBP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms