RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 OGNP20774 298 aaKnown RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 SCNN1AP37088 669 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 CCINQ13939 588 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 CRB2Q5IJ48 1285 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 COLEC12Q5KU26 742 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 SSX6Q7RTT6 188 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 OR4K17Q8NGC6 315 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 PKP4Q99569 1192 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 TM9SF2Q99805 663 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 FBXW11Q9UKB1 542 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 GRXCR2A6NFK2 248 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 NPIPA5E9PKD4 350 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 COL6A2P12110 1019 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 LHCGRP22888 699 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 XKP51811 444 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 NDST2P52849 883 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 PPP1R8Q12972 351 aaKnown RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 SDR16C5Q8N3Y7 309 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 SDCBP2Q9H190 292 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 NPIPA1Q9UND3 350 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 RNF225M0QZC1 329 aaPredicted RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 SYN3O14994 580 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 CSTBP04080 98 aaKnown RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 GNAZP19086 355 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 ATP5A1P25705 553 aaKnown RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 CRISP3P54108 245 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 YBEYP58557 167 aaPredicted RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 AP1S1P61966 158 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 CYP4V2Q6ZWL3 525 aaPredicted RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 SYNPOQ8N3V7 929 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 GRPEL2Q8TAA5 225 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 PCDHAC1Q9H158 963 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 METTL7AQ9H8H3 244 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 COQ10BQ9H8M1 238 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 ZCCHC3Q9NUD5 404 aaKnown RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 PDE10AQ9Y233 779 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 PDCD5O14737 125 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 MUSKO15146 869 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 DUSP11O75319 330 aaKnown RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 RLN2P04090 185 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 PER3P56645 1201 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 DSG2Q14126 1118 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 RBM48Q5RL73 367 aaKnown RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 NDC1Q9BTX1 674 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 POLR2J2Q9GZM3 115 aaKnown RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 NCDNQ9UBB6 729 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 LRRIQ1Q96JM4 1722 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 BCL9O00512 1426 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 C13orf42A0A1B0GVH6 325 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 BLOC1S5-TXNDC5H3BN57 136 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 WNT9AO14904 365 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 MMP20O60882 483 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 ZNF3P17036 446 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 S100A2P29034 98 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 GBX2P52951 348 aaPredicted RBP12.34□□□□□ -0.43
SDC3-201ENST00000336798 IL10RBQ08334 325 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 TXNDC8Q6A555 127 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 ZNF226Q9NYT6 803 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 NUP50Q9UKX7 468 aa12.34□□□□□ -0.43
SDC3-201ENST00000336798 J3QLW9 94 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 SCDO00767 359 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 HCKP08631 526 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 ZNF19P17023 458 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 MLLT10P55197 1068 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 GDPD4Q6W3E5 623 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 OR5T2Q8NGG2 359 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 SLC13A3Q8WWT9 602 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 NXPE2Q96DL1 559 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 PCBD2Q9H0N5 130 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 POLR2J3Q9H1A7 115 aaKnown RBP12.33□□□□□ -0.43
SDC3-201ENST00000336798 TRPV4Q9HBA0 871 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 ERVK-18Q9QC07 812 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 FBXL3Q9UKT7 428 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 PCDHGA11Q9Y5H2 935 aa12.33□□□□□ -0.43
SDC3-201ENST00000336798 A0A1W2PRQ8 180 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 NEMP2A6NFY4 417 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 LRRC10BA6NIK2 292 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 MPZL2O60487 215 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 SCELO95171 688 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 PTGER3P43115 390 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 RTP1P59025 263 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 PDGFRLQ15198 375 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 HGSNATQ68CP4 663 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 PNLDC1Q8NA58 520 aaKnown RBP12.33□□□□□ -0.44
SDC3-201ENST00000336798 ZNF527Q8NB42 609 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 LYARQ9NX58 379 aaKnown RBP12.33□□□□□ -0.44
SDC3-201ENST00000336798 FZD4Q9ULV1 537 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 KCNK6Q9Y257 313 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 RPLP0P05388 317 aaKnown RBP12.33□□□□□ -0.44
SDC3-201ENST00000336798 ADH5P11766 374 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 AQP4P55087 323 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 UCK2Q9BZX2 261 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 H0YGN5 161 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 PPEF2O14830 753 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 DAOAP59103 153 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 FAM92BQ6ZTR7 304 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 Q6ZVU0 165 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 GJD3Q8N144 294 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 ABHD5Q8WTS1 349 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 ZC3H10Q96K80 434 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms