RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 PAIP1Q9H074 479 aaKnown RBP12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 LMAN2LQ9H0V9 348 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 ZNF696Q9H7X3 374 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 SGK2Q9HBY8 427 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 GPRC5BQ9NZH0 403 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 CIDEBQ9UHD4 219 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 INVSQ9Y283 1065 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 PCDHB14Q9Y5E9 798 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 PCDHGA11Q9Y5H2 935 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 V9GYQ6 96 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 COL4A3Q01955 1670 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 TRBV5-3A0A0A0MS03 114 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 VEGFDO43915 354 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 PRMT3O60678 531 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 MYO1DO94832 1006 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 LRATO95237 230 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 EPHX1P07099 455 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 PHC1P78364 1004 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 RUNX3Q13761 415 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 DDX39BQ13838 428 aaKnown RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 LIN52Q52LA3 116 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 FOXB2Q5VYV0 432 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 TANGO2Q6ICL3 276 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 VITQ6UXI7 678 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 SPRED1Q7Z699 444 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 GPR180Q86V85 440 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 EPHX4Q8IUS5 362 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 SYT12Q8IV01 421 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 RIMKLAQ8IXN7 391 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 ZNF548Q8NEK5 533 aaPredicted RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 FIG4Q92562 907 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 METTL2AQ96IZ6 378 aaKnown RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 OR4K3Q96R72 315 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 MTERF1Q99551 399 aaKnown RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 BDH2Q9BUT1 245 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 HDAC8Q9BY41 377 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 GORASP2Q9H8Y8 452 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 BRF2Q9HAW0 419 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 PRM3Q9NNZ6 103 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 SERHLQ9NQF3 203 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 SPATA6Q9NWH7 488 aaPredicted RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 THAP10Q9P2Z0 257 aaPredicted RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 ATXN10Q9UBB4 475 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 GULP1Q9UBP9 304 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 PPT2Q9UMR5 302 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 OAZ3Q9UMX2 235 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 PCDHGB4Q9UN71 923 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 GPR34Q9UPC5 381 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 RUVBL1Q9Y265 456 aaKnown RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 YBX2Q9Y2T7 364 aaKnown RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 PCDHGB5Q9Y5G0 923 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 KCNE2Q9Y6J6 123 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 C17orf113A0A1B0GUU1 675 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 ELOVL7A1L3X0 281 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 PDLIM1O00151 329 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 SCELO95171 688 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 RASAL1O95294 804 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 RAP2AP10114 183 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 OPRD1P41143 372 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 P2RY2P41231 377 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 IL12RB1P42701 662 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 CHRNB3Q05901 458 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 ACSM2AQ08AH3 577 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 NHSL2Q5HYW2 709 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 FAM46CQ5VWP2 391 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 ACSM2BQ68CK6 577 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 NAIF1Q69YI7 327 aaPredicted RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 KRT80Q6KB66 452 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 CAPN13Q6MZZ7 669 aaPredicted RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 IYDQ6PHW0 289 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 GCNT7Q6ZNI0 430 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 TRMT11Q7Z4G4 463 aaKnown RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 GPR149Q86SP6 731 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 CARM1Q86X55 608 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 YAF2Q8IY57 180 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 SYTL1Q8IYJ3 562 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 RNF175Q8N4F7 328 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 NELL1Q92832 810 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 HIC2Q96JB3 615 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 LINC00615Q96LM1 132 aaPredicted RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 CDCA3Q99618 268 aaPredicted RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 EBPLQ9BY08 206 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 UGT2B28Q9BY64 529 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 MRPS26Q9BYN8 205 aaKnown RBP12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 ANKRD60Q9BZ19 345 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 IKZF5Q9H5V7 419 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 IGFLR1Q9H665 355 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 PRSS16Q9NQE7 514 aa12.53□□□□□ -0.4
SPTLC1-201ENST00000262554 FAM220BPB1ANY3 271 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 SMIM18P0DKX4 95 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 PCNAP12004 261 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 ZNF8P17098 575 aaPredicted RBP12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 KIR3DL1P43629 444 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 HNRNPFP52597 415 aaKnown RBP12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 PNLIPRP1P54315 467 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 SRSF11Q05519 484 aaKnown RBP12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 FCHO2Q0JRZ9 810 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 GTDC1Q4AE62 458 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 MICU2Q8IYU8 434 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 OR2L2Q8NH16 312 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms