RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CYP2S1Q96SQ9 504 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 ACTR3BQ9P1U1 418 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 A0A075B6Q4 140 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 TULP2O00295 520 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 SAP18O00422 153 aaKnown RBP13.24□□□□□ -0.29
SF3A1-201ENST00000215793 ACSL1P33121 698 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 RPL26P61254 145 aaKnown RBP13.24□□□□□ -0.29
SF3A1-201ENST00000215793 SLC25A11Q02978 314 aaKnown RBP13.24□□□□□ -0.29
SF3A1-201ENST00000215793 CBLBQ13191 982 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 NPTX1Q15818 432 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 TPRG1Q6ZUI0 275 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 MINDY2Q8NBR6 621 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 TBL1XR1Q9BZK7 514 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 CHMP1AQ9HD42 196 aaPredicted RBP13.24□□□□□ -0.29
SF3A1-201ENST00000215793 SLC17A6Q9P2U8 582 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 CACNG4Q9UBN1 327 aa13.24□□□□□ -0.29
SF3A1-201ENST00000215793 LCHNA4D1U4 455 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 M0R2N6 131 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 ITGA10O75578 1167 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 SCGNO76038 276 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 ALPIP09923 528 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 VIPR1P32241 457 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 DUOXA1Q1HG43 343 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 TIFABQ6ZNK6 161 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 NXPE1Q8N323 547 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 C15orf40Q8WUR7 153 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 KXD1Q9BQD3 176 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 CCSER2Q9H7U1 834 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 AMBNQ9NP70 447 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 SERINC1Q9NRX5 453 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 AASSQ9UDR5 926 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 TMEM59LQ9UK28 342 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 SLC22A14Q9Y267 594 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 PCDHGA10Q9Y5H3 936 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 FKBP7Q9Y680 259 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 CLCA3PQ9Y6N3 262 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 ERI3O43414 337 aaKnown RBP13.23□□□□□ -0.29
SF3A1-201ENST00000215793 ATF6P18850 670 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 EIF5AP63241 154 aaKnown RBP13.23□□□□□ -0.29
SF3A1-201ENST00000215793 SEMG2Q02383 582 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 ABHD18Q0P651 414 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 SPATS1Q496A3 300 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 CDCA2Q69YH5 1023 aaPredicted RBP13.23□□□□□ -0.29
SF3A1-201ENST00000215793 ZNF676Q8N7Q3 588 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 TUBGCP5Q96RT8 1024 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 DERL2Q9GZP9 239 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 NEUROD4Q9HD90 331 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 MARK1Q9P0L2 795 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 SLIT2O94813 1529 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 A0A1W2PP18 115 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 ARVCFO00192 962 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 TBX1O43435 398 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 RCBTB2O95199 551 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 APOC1P02654 83 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 GSK3BP49841 420 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 SMU1Q2TAY7 513 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 TOR1AIP1Q5JTV8 583 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 OR4F3Q6IEY1 312 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 GDF6Q6KF10 455 aaPredicted RBP13.23□□□□□ -0.29
SF3A1-201ENST00000215793 KLK6Q92876 244 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 SYT17Q9BSW7 474 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 FAM120CQ9NX05 1096 aaKnown RBP13.23□□□□□ -0.29
SF3A1-201ENST00000215793 PMF1-BGLAPU3KQ54 211 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 J3KR12 359 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 ACOX3O15254 700 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 MID1O15344 667 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 OAS1P00973 400 aaKnown RBP13.23□□□□□ -0.29
SF3A1-201ENST00000215793 ZNF3P17036 446 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 FMO3P31513 532 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 PUM1Q14671 1186 aaKnown RBP eCLIP13.23□□□□□ -0.293e-6■□□□□ 9.3
SF3A1-201ENST00000215793 ENPP7Q6UWV6 458 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 LINGO2Q7L985 606 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 SLC22A15Q8IZD6 547 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 CCDC54Q8NEL0 328 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 COQ8BQ96D53 544 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 RNF39Q9H2S5 420 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 MINDY3Q9H8M7 445 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 CERS4Q9HA82 394 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 TMLHEQ9NVH6 421 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 DKK3Q9UBP4 350 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 RIMKLBQ9ULI2 386 aa13.23□□□□□ -0.29
SF3A1-201ENST00000215793 TLR4O00206 839 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 CPNE3O75131 537 aaKnown RBP13.22□□□□□ -0.29
SF3A1-201ENST00000215793 CHRM5P08912 532 aaPredicted RBP13.22□□□□□ -0.29
SF3A1-201ENST00000215793 PEPDP12955 493 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 OR3A3P47888 321 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 OR3A2P47893 321 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 CDK6Q00534 326 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 INCA1Q0VD86 236 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 MADCAM1Q13477 382 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 CARTPTQ16568 116 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 ZBED5Q49AG3 693 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 GALNT15Q8N3T1 639 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 ARNTL2Q8WYA1 636 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 KLHL6Q8WZ60 621 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 KIAA1191Q96A73 305 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 SCLYQ96I15 445 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 JSRP1Q96MG2 331 aaPredicted RBP13.22□□□□□ -0.29
SF3A1-201ENST00000215793 MAPKAP1Q9BPZ7 522 aa13.22□□□□□ -0.29
SF3A1-201ENST00000215793 SLC45A1Q9Y2W3 748 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms