RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 FAR1Q8WVX9 515 aa17.06■□□□□ 0.32
SHKBP1-227ENST00000602011 BAG1Q99933 345 aaPredicted RBP17.06■□□□□ 0.32
SHKBP1-227ENST00000602011 CATSPERZQ9NTU4 200 aa17.06■□□□□ 0.32
SHKBP1-227ENST00000602011 UTP6Q9NYH9 597 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-227ENST00000602011 GNPTGQ9UJJ9 305 aa17.06■□□□□ 0.32
SHKBP1-227ENST00000602011 CDC14AQ9UNH5 594 aa17.06■□□□□ 0.32
SHKBP1-227ENST00000602011 NOVA2Q9UNW9 492 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-227ENST00000602011 CSMD1Q96PZ7 3565 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 HYKKA2RU49 373 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 CD3EAPO15446 510 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 PRPF4O43172 522 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 LIASO43766 372 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 IFNB1P01574 187 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 RPS3P23396 243 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 GRIA3P42263 894 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 ZNF75DP51815 510 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 CSE1LP55060 971 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 AP2B1P63010 937 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 ZNF169Q14929 603 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 MUM1Q2TAK8 710 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 SEL1L2Q5TEA6 688 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 ARMC3Q5W041 872 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 OTOAQ7RTW8 1153 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 VRK3Q8IV63 474 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 SRRM1Q8IYB3 904 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 CCDC89Q8N998 374 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 INPP5DQ92835 1189 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 ZNF304Q9HCX3 659 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 RAB6BQ9NRW1 208 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 SPATA7Q9P0W8 599 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 ZNF282Q9UDV7 671 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 SLC2A6Q9UGQ3 507 aa17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 MDC1Q14676 2089 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-227ENST00000602011 CCDC88CQ9P219 2028 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 H3BMM5 538 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 NDUFS3O75489 264 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 USP1O94782 785 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 C1orf105O95561 183 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 HPP00738 406 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 MYBL2P10244 700 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 HSD17B2P37059 387 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 NPY2RP49146 381 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 CDC16Q13042 620 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 MFAP5Q13361 173 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 WASHC2DQ5SRD0 308 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 SDCCAG8Q86SQ7 713 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 ACRBPQ8NEB7 543 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 OR11G2Q8NGC1 345 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 MVB12AQ96EY5 273 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 TCF12Q99081 682 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 IL22Q9GZX6 179 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 ZBTB20Q9HC78 741 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 EIF2B3Q9NR50 452 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 TTC7AQ9ULT0 858 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 DRG1Q9Y295 367 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 NTNG1Q9Y2I2 539 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 KLHL20Q9Y2M5 609 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 FER1L5A0AVI2 2057 aa17.04■□□□□ 0.32
SHKBP1-227ENST00000602011 A0A1B0GUH1 482 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 APRTP07741 180 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 ATP5DP30049 168 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 RNF187Q5TA31 235 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 COX15Q7KZN9 410 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 TICAM1Q8IUC6 712 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 FAM20CQ8IXL6 584 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 TAB3Q8N5C8 712 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 MIEF2Q96C03 454 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 THOC3Q96J01 351 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 ZNF778Q96MU6 729 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 CRB3Q9BUF7 120 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 P2RY12Q9H244 342 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 RUBCNLQ9H714 662 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 BFARQ9NZS9 450 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 PACSIN2Q9UNF0 486 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 CROCCQ5TZA2 2017 aa17.03■□□□□ 0.32
SHKBP1-227ENST00000602011 IGLV3-12A0A075B6K2 115 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 TCRBV7S2A1N4TA0A589 114 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 IQCF5A8MTL0 148 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 TXNDC9O14530 226 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 MAP2K7O14733 419 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 VPS26AO75436 327 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 FTCDO95954 541 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 ZGLP1P0C6A0 271 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 ICAM2P13598 275 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 ACPPP15309 386 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 CXCR2P25025 360 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 CMPK1P30085 196 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 OR1D4P47884 311 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 ADARP55265 1226 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 VSX2P58304 361 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 CDK16Q00536 496 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 RELAQ04206 551 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 ARHGAP19Q14CB8 494 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 INAQ16352 499 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 HIF1AQ16665 826 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 GARNL3Q5VVW2 1013 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 C1QL3Q5VWW1 255 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 ATG9BQ674R7 924 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 MRNIPQ6NTE8 343 aa17.02■□□□□ 0.32
SHKBP1-227ENST00000602011 FAM180AQ6UWF9 173 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms