RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 GRM7Q14831 915 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 ZRSR2Q15696 482 aaKnown RBP11.99□□□□□ -0.49
TRIM28-212ENST00000597995 FAM214AQ32MH5 1076 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 TUBB8Q3ZCM7 444 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 RPUSD3Q6P087 351 aaKnown RBP11.99□□□□□ -0.49
TRIM28-212ENST00000597995 COX15Q7KZN9 410 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 SLC22A15Q8IZD6 547 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 LINC01555Q8NAE3 123 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 ZNF285Q96NJ3 590 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 LMF1Q96S06 567 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 MENTQ9BUN1 341 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 CHRAC1Q9NRG0 131 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 CUTCQ9NTM9 273 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 MARCH4Q9P2E8 410 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-212ENST00000597995 OSGIN2Q9Y236 505 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 ZKSCAN5Q9Y2L8 839 aa11.99□□□□□ -0.49
TRIM28-212ENST00000597995 A0A1B0GUH1 482 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 FITM1A5D6W6 292 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 VSTM2BA6NLU5 285 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 SRPX2O60687 465 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-212ENST00000597995 STSP08842 583 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 SESN2P58004 480 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-212ENST00000597995 TTC27Q6P3X3 843 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 FIGLAQ6QHK4 219 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 AFTPHQ6ULP2 937 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 ISLR2Q6UXK2 745 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 UNC5DQ6UXZ4 953 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 LDB1Q86U70 411 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-212ENST00000597995 DCUN1D3Q8IWE4 304 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 REXO1L1PQ8IX06 675 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 FAM20CQ8IXL6 584 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 PARP9Q8IXQ6 854 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 RASGEF1CQ8N431 466 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 OR2L8Q8NGY9 312 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 OR4L1Q8NH43 312 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 LKAAEAR1Q8TD35 194 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 ASZ1Q8WWH4 475 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 ZUFSPQ96AP4 578 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 MS4A14Q96JA4 679 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 SLX1AQ9BQ83 275 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 TSSK1BQ9BXA7 367 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 EIF2B3Q9NR50 452 aaKnown RBP11.98□□□□□ -0.49
TRIM28-212ENST00000597995 TREX1Q9NSU2 369 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-212ENST00000597995 KLHL20Q9Y2M5 609 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 CROCCQ5TZA2 2017 aa11.98□□□□□ -0.49
TRIM28-212ENST00000597995 TARM1B6A8C7 271 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 ALOX12BO75342 701 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 GPC4O75487 556 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 GAS8O95995 478 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 ARNTP27540 789 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 NMBRP28336 390 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 CCR7P32248 378 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 PPARGP37231 505 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 CARSP49589 748 aaKnown RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 BASP1P80723 227 aaKnown RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 MFAP5Q13361 173 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 GRB7Q14451 532 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 SF1Q15637 639 aaKnown RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 TRIP13Q15645 432 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 RBBP7Q16576 425 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 PCID2Q5JVF3 399 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 FAM180AQ6UWF9 173 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 NLRP9Q7RTR0 991 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 VRK3Q8IV63 474 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 SRRM1Q8IYB3 904 aaKnown RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 TTC29Q8NA56 475 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 OR11G2Q8NGC1 345 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 OR6P1Q8NGX9 317 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 MAIP1Q8WWC4 291 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 PEX13Q92968 403 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 MARVELD3Q96A59 401 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 THOC3Q96J01 351 aaKnown RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 CNDP1Q96KN2 507 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 TRIM56Q9BRZ2 755 aaKnown RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 CARD6Q9BX69 1037 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 KCNF1Q9H3M0 494 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 SOX17Q9H6I2 414 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 GRPEL1Q9HAV7 217 aa11.97□□□□□ -0.49
TRIM28-212ENST00000597995 TTC7AQ9ULT0 858 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-212ENST00000597995 IQCF5A8MTL0 148 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 RASGRF2O14827 1237 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 PRICKLE3O43900 615 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-212ENST00000597995 SLCO2B1O94956 709 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 HPP00738 406 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 APOA4P06727 396 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 MCM3P25205 808 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 ELAVL4P26378 380 aaKnown RBP11.96□□□□□ -0.49
TRIM28-212ENST00000597995 MGAT1P26572 445 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 GRIA3P42263 894 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 HSPA14Q0VDF9 509 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 Q0VFX4 171 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 ANKRD22Q5VYY1 191 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 SP5Q6BEB4 398 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-212ENST00000597995 PRMT9Q6P2P2 845 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 TTC23LQ6PF05 361 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 CES3Q6UWW8 571 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 C4orf22Q6V702 233 aa11.96□□□□□ -0.49
TRIM28-212ENST00000597995 GSTA5Q7RTV2 222 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms