RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 AVPR1AP37288 418 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 GSTM5P46439 218 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 CLCN3P51790 818 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 YBX1P67809 324 aaKnown RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 RPP38P78345 283 aaKnown RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 MXD4Q14582 209 aaPredicted RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 VEPH1Q14D04 833 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 ETFDHQ16134 617 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 PABPC1L2AQ5JQF8 200 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 PAGE3Q5JUK9 113 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 HES5Q5TA89 166 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 TRIQKQ629K1 86 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 SLFN12LQ6IEE8 588 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 XRRA1Q6P2D8 792 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 ERICH5Q6P6B1 374 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 GPR155Q7Z3F1 870 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 ADGRD2Q7Z7M1 963 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 DDX53Q86TM3 631 aaKnown RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 EFHBQ8N7U6 833 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 HEXDCQ8WVB3 486 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 RXFP2Q8WXD0 754 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 EXOC2Q96KP1 924 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 CCDC17Q96LX7 622 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 C3orf30Q96M34 536 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 RBP7Q96R05 134 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 BBS4Q96RK4 519 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 DPCDQ9BVM2 203 aaPredicted RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 GPR63Q9BZJ6 419 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 PRDM12Q9H4Q4 367 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 ZIM2Q9NZV7 527 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 LIMD1Q9UGP4 676 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 PCDHGB7Q9Y5F8 929 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 GJA3Q9Y6H8 435 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 STYXL1Q9Y6J8 313 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 FAM234BA2RU67 622 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 PCDH17O14917 1159 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 WBP4O75554 376 aaKnown RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 ALDH1A1P00352 501 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 PGK1P00558 417 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 H2AFB1P0C5Y9 115 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 H2AFB2P0C5Z0 115 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 SMIM6P0DI80 62 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 ANXA3P12429 323 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 HK1P19367 917 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 KCNA5P22460 613 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 LHCGRP22888 699 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 CAPZA2P47755 286 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 STARP49675 285 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 ATP12AP54707 1039 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 HOXC5Q00444 222 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 PURAQ00577 322 aaKnown RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 ALDH6A1Q02252 535 aaKnown RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 SMN1Q16637 294 aaKnown RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 PDSS1Q5T2R2 415 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 CLEC6AQ6EIG7 209 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 RASSF6Q6ZTQ3 369 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 TRIM69Q86WT6 500 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 NT5DC4Q86YG4 428 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 CLEC10AQ8IUN9 316 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 LAX1Q8IWV1 398 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 OR6S1Q8NH40 331 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 CLHC1Q8NHS4 586 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 FBXO30Q8TB52 745 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 GANCQ8TET4 914 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 HGDQ93099 445 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 ZNF251Q9BRH9 671 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 RHNO1Q9BSD3 238 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 SNRNP25Q9BV90 132 aaKnown RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 TRIM8Q9BZR9 551 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 ZNF436Q9C0F3 470 aaPredicted RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 RNF167Q9H6Y7 350 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 GAREM1Q9H706 876 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 SPON1Q9HCB6 807 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 ZFP64Q9NPA5 681 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 CASS4Q9NQ75 786 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 PIH1D1Q9NWS0 290 aaKnown RBP12.12□□□□□ -0.47
USP3-203ENST00000538686 SPASTQ9UBP0 616 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 MLXQ9UH92 298 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 PFDN2Q9UHV9 154 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 SPATA2Q9UM82 520 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 TMX2Q9Y320 296 aa12.12□□□□□ -0.47
USP3-203ENST00000538686 SHANK3Q9BYB0 1731 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 FAM95CA0A1B0GW59 222 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 ASPDHA6ND91 283 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 CLCA1A8K7I4 914 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 SLC22A3O75751 556 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 AP2A1O95782 977 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 LGI1O95970 557 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 MT-CO1P00395 513 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 TSPAN19P0C672 248 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 HGFP14210 728 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 PRKACGP22612 351 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 PTBP1P26599 531 aaKnown RBP eCLIP12.11□□□□□ -0.47
USP3-203ENST00000538686 PSMB4P28070 264 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 ADRA1BP35368 520 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 GDI2P50395 445 aaKnown RBP12.11□□□□□ -0.47
USP3-203ENST00000538686 POLR2JP52435 117 aaKnown RBP12.11□□□□□ -0.47
USP3-203ENST00000538686 AIF1P55008 147 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 POU4F1Q01851 419 aa12.11□□□□□ -0.47
USP3-203ENST00000538686 CSTF1Q05048 431 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms