RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CHRM3P20309 590 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 CAPZBP47756 277 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 CCL11P51671 97 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 GFERP55789 205 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 TUBB4BP68371 445 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 HSPA14Q0VDF9 509 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 GBX1Q14549 363 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 PLEKHS1Q5SXH7 462 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 SLC22A15Q8IZD6 547 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 KLHL6Q8WZ60 621 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 C19orf60Q96EN9 201 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 TGM7Q96PF1 710 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 NDNQ99608 321 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 ULBP3Q9BZM4 244 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 CDC42EP4Q9H3Q1 356 aaKnown RBP11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 SMYD2Q9NRG4 433 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 LATS2Q9NRM7 1088 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 SIDT1Q9NXL6 827 aaKnown RBP11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 NINJ2Q9NZG7 142 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 LUZP4Q9P127 313 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 ITGB1BP2Q9UKP3 347 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 MED16Q9Y2X0 877 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 HEBP2Q9Y5Z4 205 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 DCHS2Q6V1P9 2916 aa11.52□□□□□ -0.57
SQSTM1-206ENST00000466342 ANKUB1A6NFN9 424 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 FAM159BA6NKW6 160 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 CXorf49A8MYA2 514 aaPredicted RBP11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 RASSF9O75901 435 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 CCNYL3P0C7X3 344 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 ZNF28P17035 718 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 ACADLP28330 430 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 NDUFS1P28331 727 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 ATP5DP30049 168 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 PHBP35232 272 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 CLCN7P51798 805 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 CSE1LP55060 971 aaKnown RBP11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 ELOAQ14241 798 aaKnown RBP11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 IL11RAQ14626 422 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 SLMAPQ14BN4 828 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 KYNUQ16719 465 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 RBM20Q5T481 1227 aaKnown RBP11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 DUS1LQ6P1R4 473 aaKnown RBP11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 CYB5D1Q6P9G0 228 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 PRSS42Q7Z5A4 293 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 STRA8Q7Z7C7 330 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 ZC3HC1Q86WB0 502 aaKnown RBP11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 HPS6Q86YV9 775 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 VRK3Q8IV63 474 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 ZBTB2Q8N680 514 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 GALNT6Q8NCL4 622 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 FBF1Q8TES7 1133 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 THAP4Q8WY91 577 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 RSC1A1Q92681 617 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 TFGQ92734 400 aaPredicted RBP11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 PNPLA2Q96AD5 504 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 FAM136AQ96C01 138 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 SNRNP40Q96DI7 357 aaKnown RBP11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 ANKZF1Q9H8Y5 726 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 ASF1BQ9NVP2 202 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 SEMA5BQ9P283 1151 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 KLHL42Q9P2K6 505 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 GALPQ9UBC7 116 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 PSAT1Q9Y617 370 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 COLEC10Q9Y6Z7 277 aa11.51□□□□□ -0.57
SQSTM1-206ENST00000466342 A0A1B0GTL3 188 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 VPS26AO75436 327 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 PIAS1O75925 651 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 CD9P21926 228 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 SEPHS1P49903 392 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 FOXM1Q08050 763 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 ILF2Q12905 390 aaKnown RBP11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 NAB1Q13506 487 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 KRT33BQ14525 404 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 TTLL9Q3SXZ7 439 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 KBTBD12Q3ZCT8 623 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 CACHD1Q5VU97 1274 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 SLC6A19Q695T7 634 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 FAM45BPQ6NSW5 357 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 UGT3A1Q6NUS8 523 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 IRGCQ6NXR0 463 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 CTAGE3PQ8IX95 158 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 GIMAP7Q8NHV1 300 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 FAM45AQ8TCE6 357 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 CD200R1Q8TD46 325 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 UBXN4Q92575 508 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 LURAP1Q96LR2 239 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 FERD3LQ96RJ6 166 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 CD180Q99467 661 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 GPR21Q99679 349 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 SLC30A3Q99726 388 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 CPNE1Q99829 537 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 MCMBPQ9BTE3 642 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 FUT8Q9BYC5 575 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 RHOJQ9H4E5 214 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 KIR3DX1Q9H7L2 352 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 MVB12BQ9H7P6 319 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 ACSS2Q9NR19 701 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 TAS2R13Q9NYV9 303 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 TXNDC16Q9P2K2 825 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 PADI1Q9ULC6 663 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms