RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 COPG2Q9UBF2 871 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 PCDHB11Q9Y5F2 797 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 CEP250Q9BV73 2442 aa15.25■□□□□ 0.03
USP40-206ENST00000443711 NTN3O00634 580 aaPredicted RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 CAPN5O15484 640 aaPredicted RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 CCNT2O60583 730 aaKnown RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 CCNDBP1O95273 360 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 FKBP9O95302 570 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 UGT2B7P16662 529 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 PRDX3P30048 256 aaKnown RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 PEBP1P30086 187 aaKnown RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 HPDP32754 393 aaPredicted RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 ETV4P43268 484 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 PRKAA2P54646 552 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 ASPHQ12797 758 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 PCBP2Q15366 365 aaKnown RBP eCLIP15.24■□□□□ 0.03
USP40-206ENST00000443711 SF1Q15637 639 aaKnown RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 HHATQ5VTY9 493 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 PRAMEF13Q5VWM6 474 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 IRGCQ6NXR0 463 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 TMEM71Q6P5X7 295 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 LCTLQ6UWM7 567 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 LRRC70Q7Z2Q7 622 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 THOC6Q86W42 341 aaKnown RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 OR2A1Q8NGT9 310 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 SREK1Q8WXA9 508 aaKnown RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 ESAMQ96AP7 390 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 PYCR2Q96C36 320 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 OR2A14Q96R47 310 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 CD180Q99467 661 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 RTKNQ9BST9 563 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 HAUS8Q9BT25 410 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 INTS7Q9NVH2 962 aaKnown RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 OPTCQ9UBM4 332 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 POMT2Q9UKY4 750 aa15.24■□□□□ 0.03
USP40-206ENST00000443711 APOBEC2Q9Y235 224 aaKnown RBP15.24■□□□□ 0.03
USP40-206ENST00000443711 SNRNP200O75643 2136 aaKnown RBP15.23■□□□□ 0.03
USP40-206ENST00000443711 SPAARA0A1B0GVQ0 90 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 K7EPI3 171 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 WDR47O94967 919 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 NPPBP16860 134 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 IMPDH1P20839 514 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 EEF1DP29692 281 aaKnown RBP15.23■□□□□ 0.03
USP40-206ENST00000443711 CMPK1P30085 196 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 GDF5P43026 501 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 AGTR2P50052 363 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 NOVA1P51513 510 aaKnown RBP15.23■□□□□ 0.03
USP40-206ENST00000443711 DNAJB13P59910 316 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 HERVK_113P63132 956 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 PPP2R2AP63151 447 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 ABATP80404 500 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 CFHR1Q03591 330 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 SPIDRQ14159 915 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 SLC5A12Q1EHB4 618 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 FBXO48Q5FWF7 155 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 SPESP1Q6UW49 350 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 FLVCR1-AS1Q8TAF5 88 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 TGM7Q96PF1 710 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 ACAT2Q9BWD1 397 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 ERVK-6Q9BXR3 956 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 CAPS2Q9BXY5 557 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 DNAJC11Q9NVH1 559 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 OXSMQ9NWU1 459 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 TOR4AQ9NXH8 423 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 TAC3Q9UHF0 121 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 ATXN7L1Q9ULK2 861 aaPredicted RBP15.23■□□□□ 0.03
USP40-206ENST00000443711 SLC22A14Q9Y267 594 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 DYRK1BQ9Y463 629 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 ANGPTL3Q9Y5C1 460 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 KCNE2Q9Y6J6 123 aa15.23■□□□□ 0.03
USP40-206ENST00000443711 PIEZO1Q92508 2521 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 MN1Q10571 1320 aaPredicted RBP15.22■□□□□ 0.03
USP40-206ENST00000443711 BIRC5O15392 142 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 TRIM13O60858 407 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 SIX3O95343 332 aaPredicted RBP15.22■□□□□ 0.03
USP40-206ENST00000443711 C9P02748 559 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 BPGMP07738 259 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 DHRS4L1P0CG22 281 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 CDH3P22223 829 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 KCNA4P22459 653 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 PSMB5P28074 263 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 ALDH3A1P30838 453 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 CSF2RBP32927 897 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 SERPINB4P48594 390 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 PIK3CGP48736 1102 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 NAA20P61599 178 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 SIM1P81133 766 aaPredicted RBP15.22■□□□□ 0.03
USP40-206ENST00000443711 PRDX1Q06830 199 aaKnown RBP15.22■□□□□ 0.03
USP40-206ENST00000443711 PCLAFQ15004 111 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 LIPMQ5VYY2 423 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 ICE2Q659A1 982 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 SLCO6A1Q86UG4 719 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 C17orf64Q86WR6 236 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 NUDCD3Q8IVD9 361 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 C10orf107Q8IVU9 208 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 CARFQ8N187 725 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 TEX9Q8N6V9 391 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 SNX31Q8N9S9 440 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 OR4D9Q8NGE8 314 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 PPP4R1Q8TF05 950 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms