RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	HGS	O14964	777 aa	Predicted RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	MAP3K7	O43318	606 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	IPO13	O94829	963 aa	Known RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	TOP3B	O95985	862 aa	Known RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	CMPK1	P30085	196 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	PEBP1	P30086	187 aa	Known RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	CSTF2	P33240	577 aa	Known RBP eCLIP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	ARL4D	P49703	201 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	PDX1	P52945	283 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	NAE1	Q13564	534 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	NAA25	Q14CX7	972 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	SF1	Q15637	639 aa	Known RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	PRAMEF13	Q5VWM6	474 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	CAPN13	Q6MZZ7	669 aa	Predicted RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	SUSD1	Q6UWL2	747 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	KMT5C	Q86Y97	462 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	C4orf33	Q8N1A6	199 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	LMNTD1	Q8N9Z9	388 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	OR56A3	Q8NH54	315 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	ALKBH8	Q96BT7	664 aa	Known RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	RHBDF1	Q96CC6	855 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	LIN37	Q96GY3	246 aa	Predicted RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	SMC6	Q96SB8	1091 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	PITPNM3	Q9BZ71	974 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	IQCG	Q9H095	443 aa	Known RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	ATG10	Q9H0Y0	220 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	ZNF768	Q9H5H4	540 aa	Known RBP	12.7	□□□□□ -0.38
SF1-206	ENST00000413725	ABCF3	Q9NUQ8	709 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	ZNF358	Q9NW07	568 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725	XPR1	Q9UBH6	696 aa		12.7	□□□□□ -0.38
SF1-206	ENST00000413725		A0A1W2PPV9	198 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	HYAL3	O43820	417 aa	Predicted RBP	12.69	□□□□□ -0.38
SF1-206	ENST00000413725	KIF1C	O43896	1103 aa	Known RBP	12.69	□□□□□ -0.38
SF1-206	ENST00000413725	PRICKLE3	O43900	615 aa	Predicted RBP	12.69	□□□□□ -0.38
SF1-206	ENST00000413725	SMIM24	O75264	130 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	ZBTB11	O95625	1053 aa	Predicted RBP	12.69	□□□□□ -0.38
SF1-206	ENST00000413725	GFAP	P14136	432 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	PSMB5	P28074	263 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	CRHR1	P34998	444 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	KCNC1	P48547	511 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	SEPHS1	P49903	392 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	SLC18A2	Q05940	514 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	TARDBP	Q13148	414 aa	Known RBP eCLIP	12.69	□□□□□ -0.38	1e-6	■■□□□ 12.3
SF1-206	ENST00000413725	EIF3I	Q13347	325 aa	Known RBP	12.69	□□□□□ -0.38
SF1-206	ENST00000413725	SH2D5	Q6ZV89	423 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	ARHGAP22	Q7Z5H3	698 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	TRIM73	Q86UV7	250 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	LRRC56	Q8IYG6	542 aa	Predicted RBP	12.69	□□□□□ -0.38
SF1-206	ENST00000413725	FBXO39	Q8N4B4	442 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	AGBL5	Q8NDL9	886 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	RCBTB1	Q8NDN9	531 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	OR2L3	Q8NG85	312 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	OR2A1	Q8NGT9	310 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	FLVCR1-AS1	Q8TAF5	88 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	PGM2	Q96G03	612 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	APOPT1	Q96IL0	206 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	CMKLR1	Q99788	373 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	MIPEP	Q99797	713 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	HAUS8	Q9BT25	410 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	ACAT2	Q9BWD1	397 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	SGPP1	Q9BX95	441 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	VIPAS39	Q9H9C1	493 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	MRPS30	Q9NP92	439 aa	Known RBP	12.69	□□□□□ -0.38
SF1-206	ENST00000413725	SOHLH2	Q9NX45	425 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	MKS1	Q9NXB0	559 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	SEMA5B	Q9P283	1151 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	CPSF2	Q9P2I0	782 aa	Known RBP	12.69	□□□□□ -0.38
SF1-206	ENST00000413725	TAC3	Q9UHF0	121 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	GRID1	Q9ULK0	1009 aa		12.69	□□□□□ -0.38
SF1-206	ENST00000413725	CCDC187	A0A096LP49	1063 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	IGHV5-51	A0A0C4DH38	117 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	FAM149A	A5PLN7	773 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	TK2	O00142	265 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	WDR47	O94967	919 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	TAC1	P20366	129 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	ALDH18A1	P54886	795 aa	Known RBP	12.68	□□□□□ -0.38
SF1-206	ENST00000413725	HSD11B2	P80365	405 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	ABAT	P80404	500 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	C16orf72	Q14CZ0	275 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	PTCHD3	Q3KNS1	767 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	CCDC153	Q494R4	210 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	TMTC4	Q5T4D3	741 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	ICE2	Q659A1	982 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	CYB5D1	Q6P9G0	228 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	LCTL	Q6UWM7	567 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	C19orf47	Q8N9M1	422 aa	Known RBP	12.68	□□□□□ -0.38
SF1-206	ENST00000413725	KLHL6	Q8WZ60	621 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	PYCR2	Q96C36	320 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	PKNOX2	Q96KN3	472 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	PPM1M	Q96MI6	270 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	TRAPPC9	Q96Q05	1148 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	TMEM216	Q9P0N5	145 aa		12.68	□□□□□ -0.38
SF1-206	ENST00000413725	PTBP2	Q9UKA9	531 aa	Known RBP	12.68	□□□□□ -0.38
SF1-206	ENST00000413725	SLC9B1P1	A6NJY1	282 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	MAP2K7	O14733	419 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	STK16	O75716	305 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	ADRB1	P08588	477 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	MTHFD2	P13995	350 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	PVR	P15151	417 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	ST6GAL1	P15907	406 aa		12.67	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms