RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 DRICH1Q6PGQ1 229 aaPredicted RBP17.7■□□□□ 0.42
CLN3-241ENST00000635861 GSDMBQ8TAX9 411 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 ZUFSPQ96AP4 578 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 RAD51AP1Q96B01 352 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 VPS50Q96JG6 964 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 MFRPQ9BY79 579 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 ATP13A2Q9NQ11 1180 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.7■□□□□ 0.42
CLN3-241ENST00000635861 GNPTGQ9UJJ9 305 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 NXT1Q9UKK6 140 aaKnown RBP17.7■□□□□ 0.42
CLN3-241ENST00000635861 SLC39A10Q9ULF5 831 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 TCP11X1B4DZS4 312 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 DSCR3O14972 297 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 CD3EAPO15446 510 aaKnown RBP17.69■□□□□ 0.42
CLN3-241ENST00000635861 RPS3P23396 243 aaKnown RBP eCLIP17.69■□□□□ 0.424e-6■■□□□ 12.9
CLN3-241ENST00000635861 CSE1LP55060 971 aaKnown RBP17.69■□□□□ 0.42
CLN3-241ENST00000635861 AIMP2Q13155 320 aaKnown RBP17.69■□□□□ 0.42
CLN3-241ENST00000635861 SEMA3AQ14563 771 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 GRM7Q14831 915 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 NAA25Q14CX7 972 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 OVCH1Q7RTY7 1134 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 PPP1R32Q7Z5V6 425 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 VRK3Q8IV63 474 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 MCATQ8IVS2 390 aaKnown RBP17.69■□□□□ 0.42
CLN3-241ENST00000635861 HMGCLL1Q8TB92 370 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 COG1Q8WTW3 980 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 ZNF285Q96NJ3 590 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 IL22Q9GZX6 179 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 P2RY12Q9H244 342 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 ZNF552Q9H707 407 aaPredicted RBP17.69■□□□□ 0.42
CLN3-241ENST00000635861 MRM3Q9HC36 420 aaKnown RBP17.69■□□□□ 0.42
CLN3-241ENST00000635861 KLK4Q9Y5K2 254 aa17.69■□□□□ 0.42
CLN3-241ENST00000635861 A0A0U1RQJ8 604 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 CNOT3O75175 753 aaKnown RBP17.68■□□□□ 0.42
CLN3-241ENST00000635861 UMODP07911 640 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 MMP11P24347 488 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 CCNFP41002 786 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 CCNG2Q16589 344 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 FAM214AQ32MH5 1076 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 ARMC3Q5W041 872 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 PTRHD1Q6GMV3 140 aaKnown RBP17.68■□□□□ 0.42
CLN3-241ENST00000635861 FIGLAQ6QHK4 219 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 ZADH2Q8N4Q0 377 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 TTC29Q8NA56 475 aaPredicted RBP17.68■□□□□ 0.42
CLN3-241ENST00000635861 LKAAEAR1Q8TD35 194 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 MAGEC3Q8TD91 643 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 TREX1Q9NSU2 369 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 PLEKHB1Q9UF11 243 aaPredicted RBP17.68■□□□□ 0.42
CLN3-241ENST00000635861 DRG1Q9Y295 367 aaKnown RBP17.68■□□□□ 0.42
CLN3-241ENST00000635861 POLEQ07864 2286 aa17.68■□□□□ 0.42
CLN3-241ENST00000635861 FITM1A5D6W6 292 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 SRPX2O60687 465 aaPredicted RBP17.67■□□□□ 0.42
CLN3-241ENST00000635861 CTSBP07858 339 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 ALAS2P22557 587 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 NPY2RP49146 381 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 RAPSNQ13702 412 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 SF1Q15637 639 aaKnown RBP17.67■□□□□ 0.42
CLN3-241ENST00000635861 PLEKHN1Q494U1 663 aaPredicted RBP17.67■□□□□ 0.42
CLN3-241ENST00000635861 C4orf17Q53FE4 359 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 TTLL10Q6ZVT0 673 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 LMNTD1Q8N9Z9 388 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 CFAP61Q8NHU2 1237 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 MAIP1Q8WWC4 291 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 C1orf54Q8WWF1 131 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 FOPNLQ96NB1 174 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 CHRAC1Q9NRG0 131 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 SLC22A11Q9NSA0 550 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 CUTCQ9NTM9 273 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 BFARQ9NZS9 450 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 ITPR2Q14571 2701 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 CRYBG3Q68DQ2 2970 aa17.67■□□□□ 0.42
CLN3-241ENST00000635861 NOTCH2Q04721 2471 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 IQCF5A8MTL0 148 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 DYNC1I1O14576 645 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 PFDN6O15212 129 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 PRICKLE3O43900 615 aaPredicted RBP17.66■□□□□ 0.42
CLN3-241ENST00000635861 ITGAXP20702 1163 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 SLC9A5Q14940 896 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 PRR30Q53SZ7 412 aaPredicted RBP17.66■□□□□ 0.42
CLN3-241ENST00000635861 MEI1Q5TIA1 1274 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 FCRL6Q6DN72 434 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 Q6ZS92 163 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 OTOAQ7RTW8 1153 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 SNRNP40Q96DI7 357 aaKnown RBP17.66■□□□□ 0.42
CLN3-241ENST00000635861 SELENOSQ9BQE4 189 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 ILKAPQ9H0C8 392 aaPredicted RBP17.66■□□□□ 0.42
CLN3-241ENST00000635861 LUZP4Q9P127 313 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 MAP10Q9P2G4 905 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 FAM169AQ9Y6X4 670 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 ZGRF1Q86YA3 2104 aa17.66■□□□□ 0.42
CLN3-241ENST00000635861 H3BMM5 538 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 NDUFS3O75489 264 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 ETS1P14921 441 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 ATP5DP30049 168 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 RPL22P35268 128 aaKnown RBP17.65■□□□□ 0.42
CLN3-241ENST00000635861 CDK16Q00536 496 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 SNX1Q13596 522 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 RPS6KA1Q15418 735 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 NKG7Q16617 165 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 RNF187Q5TA31 235 aaPredicted RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms