RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 FAM60AQ9NP50 221 aa13.36□□□□□ -0.27
UPF1-205ENST00000598209 SMYD2Q9NRG4 433 aa13.36□□□□□ -0.27
UPF1-205ENST00000598209 ZDHHC18Q9NUE0 388 aa13.36□□□□□ -0.27
UPF1-205ENST00000598209 NSMCE4AQ9NXX6 385 aa13.36□□□□□ -0.27
UPF1-205ENST00000598209 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.36□□□□□ -0.27
UPF1-205ENST00000598209 VWA7Q9Y334 891 aa13.36□□□□□ -0.27
UPF1-205ENST00000598209 CFAP47Q6ZTR5 3102 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 LOC101059948A0A1B0GTJ6 334 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 TCRBV9S1A1TA0A576 114 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 ZBTB14O43829 449 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 PRICKLE3O43900 615 aaPredicted RBP13.35□□□□□ -0.27
UPF1-205ENST00000598209 SCRG1O75711 98 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 PIAS1O75925 651 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 SYF2O95926 243 aaKnown RBP13.35□□□□□ -0.27
UPF1-205ENST00000598209 NTRK1P04629 796 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 GSTA2P09210 222 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 ERGP11308 486 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 LIFP15018 202 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 WT1P19544 449 aaPredicted RBP13.35□□□□□ -0.27
UPF1-205ENST00000598209 MAGP20916 626 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 PSMB5P28074 263 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 PGGT1BP53609 377 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 GPX6P59796 221 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 ABHD18Q0P651 414 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 FASTKQ14296 549 aaKnown RBP13.35□□□□□ -0.27
UPF1-205ENST00000598209 ARHGAP19Q14CB8 494 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 SF1Q15637 639 aaKnown RBP13.35□□□□□ -0.27
UPF1-205ENST00000598209 DEFB110Q30KQ9 67 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 UBE2R2Q712K3 238 aaPredicted RBP13.35□□□□□ -0.27
UPF1-205ENST00000598209 MYO1HQ8N1T3 1032 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 CEP112Q8N8E3 955 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 OR1L3Q8NH93 324 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 CDKL2Q92772 493 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 LINGO1Q96FE5 620 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 CHRNA10Q9GZZ6 450 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 INTS7Q9NVH2 962 aaKnown RBP13.35□□□□□ -0.27
UPF1-205ENST00000598209 DMGDHQ9UI17 866 aaKnown RBP13.35□□□□□ -0.27
UPF1-205ENST00000598209 KLHL20Q9Y2M5 609 aa13.35□□□□□ -0.27
UPF1-205ENST00000598209 MDC1Q14676 2089 aaKnown RBP13.35□□□□□ -0.27
UPF1-205ENST00000598209 SEC16AO15027 2179 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 FAM95CA0A1B0GW59 222 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 A0A1W2PPV9 198 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 FAM159BA6NKW6 160 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 CXorf49A8MYA2 514 aaPredicted RBP13.34□□□□□ -0.27
UPF1-205ENST00000598209 CPNE3O75131 537 aaKnown RBP13.34□□□□□ -0.27
UPF1-205ENST00000598209 FKBP9O95302 570 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 MT-ND3P03897 115 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 C8GP07360 202 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 SAT1P21673 171 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 HSD17B2P37059 387 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 STAT5AP42229 794 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 GABRA4P48169 554 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 PNLIPRP1P54315 467 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 IL2P60568 153 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 GLE1Q53GS7 698 aaKnown RBP13.34□□□□□ -0.27
UPF1-205ENST00000598209 PRAMEF17Q5VTA0 474 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 KIAA1614Q5VZ46 1190 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 CYS1Q717R9 158 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 SNRNP27Q8WVK2 155 aaKnown RBP13.34□□□□□ -0.27
UPF1-205ENST00000598209 SMPDL3AQ92484 453 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 DLG3Q92796 817 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 N4BP2L2Q92802 583 aaPredicted RBP13.34□□□□□ -0.27
UPF1-205ENST00000598209 KIAA1143Q96AT1 154 aaPredicted RBP13.34□□□□□ -0.27
UPF1-205ENST00000598209 VPS39Q96JC1 886 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 MIPEPQ99797 713 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 RHOJQ9H4E5 214 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 GPN2Q9H9Y4 310 aaPredicted RBP13.34□□□□□ -0.27
UPF1-205ENST00000598209 LRRC4CQ9HCJ2 640 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 SERTAD3Q9UJW9 196 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 RALYQ9UKM9 306 aaKnown RBP13.34□□□□□ -0.27
UPF1-205ENST00000598209 ADAMTS6Q9UKP5 1117 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 PCDHGA4Q9Y5G9 962 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 FER1L5A0AVI2 2057 aa13.34□□□□□ -0.27
UPF1-205ENST00000598209 ZNF839A8K0R7 811 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 HCRTR1O43613 425 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 TSPAN12O95859 305 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 SLC16A8O95907 504 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 CCNYL3P0C7X3 344 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 CYP2A7P20853 494 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 ITGA1P56199 1179 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 ILF2Q12905 390 aaKnown RBP13.33□□□□□ -0.28
UPF1-205ENST00000598209 TSTA3Q13630 321 aaPredicted RBP13.33□□□□□ -0.28
UPF1-205ENST00000598209 FIGLAQ6QHK4 219 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 SUSD1Q6UWL2 747 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 SYTL1Q8IYJ3 562 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 DNAJC22Q8N4W6 341 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 ZSCAN1Q8NBB4 408 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 PPFIBP2Q8ND30 876 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 OR2L3Q8NG85 312 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 OR2A1Q8NGT9 310 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 MCOLN3Q8TDD5 553 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 ZNF480Q8WV37 535 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 CPNE1Q99829 537 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 MCMBPQ9BTE3 642 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 EFHD1Q9BUP0 239 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 SLC12A9Q9BXP2 914 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 FAM129AQ9BZQ8 928 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 LHX9Q9NQ69 397 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 TXNDC16Q9P2K2 825 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 MTRF1LQ9UGC7 380 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms