RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 MATN4O95460 622 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 C21orf33P30042 268 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 RAB25P57735 213 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 RPL38P63173 70 aaKnown RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 EMX2Q04743 252 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 INO80DQ53TQ3 878 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 SYT6Q5T7P8 510 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 KRT73Q86Y46 540 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 PHACTR4Q8IZ21 702 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 OR56A4Q8NGH8 313 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 STAG3L4Q8TBR4 150 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 TNIP3Q96KP6 325 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 TBATAQ96M53 351 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 FRMD6Q96NE9 622 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 CDK15Q96Q40 435 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 SLC22A4Q9H015 551 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 TKTL2Q9H0I9 626 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 NT5MQ9NPB1 228 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 SNTG1Q9NSN8 517 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 PIGVQ9NUD9 493 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 DNMT3LQ9UJW3 386 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 UTS2RQ9UKP6 389 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 DUSP12Q9UNI6 340 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 POLHQ9Y253 713 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 TRANK1O15050 2925 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 PTPRSQ13332 1948 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 MYBPHLA2RUH7 354 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 PLD2O14939 933 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 EEDO75530 441 aaKnown RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 OR4F21O95013 312 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 GLP2RO95838 553 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 MYCP01106 439 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 AKR1A1P14550 325 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 PFKLP17858 780 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 DNAJB1P25685 340 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 POU1F1P28069 291 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 LIPAP38571 399 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 MASP1P48740 699 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 MAXP61244 160 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 RCAN2Q14206 197 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 PLA2G4EQ3MJ16 856 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 SPATS1Q496A3 300 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 C5orf22Q49AR2 442 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 GPAT3Q53EU6 434 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 CES5AQ6NT32 575 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 ZNF549Q6P9A3 640 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 PTRH1Q86Y79 214 aaKnown RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 GLB1L3Q8NCI6 653 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 C2CD4AQ8NCU7 369 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 UBE2FQ969M7 185 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 ULK4Q96C45 1275 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 NPY6RQ99463 290 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 DUSP16Q9BY84 665 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 FAM105AQ9NUU6 356 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 CFL2Q9Y281 166 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 DNMT3AQ9Y6K1 912 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 LOC105371267A0A1B0GV96 52 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 SNX4O95219 450 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 SLC2A3P11169 496 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 SCNN1AP37088 669 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 WNT3AP56704 352 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 ERVK-8P63133 956 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 RAD51Q06609 339 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 PAFAH1B3Q15102 231 aaKnown RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 TCTN1Q2MV58 587 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 AP5B1Q2VPB7 878 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 FAM174BQ3ZCQ3 159 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 MRNIPQ6NTE8 343 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 GPRIN3Q6ZVF9 776 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 SYVN1Q86TM6 617 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 LRRTM3Q86VH5 581 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 NLGN4XQ8N0W4 816 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 TOP6BLQ8N6T0 577 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 LSMEM1Q8N8F7 131 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 PAPD5Q8NDF8 572 aaKnown RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 FCGR1BQ92637 280 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 GLOD4Q9HC38 313 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 RNF186Q9NXI6 227 aa9.36□□□□□ -0.91
CCDC40-212ENST00000574799 TRMT6Q9UJA5 497 aaKnown RBP9.36□□□□□ -0.91
CCDC40-212ENST00000574799 SLC12A8A0AV02 714 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 HMX3A6NHT5 357 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 ENPP3O14638 875 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 PDPK1O15530 556 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 TLL1O43897 1013 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 NDUFS3O75489 264 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 PCMT1P22061 227 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 ERP29P30040 261 aaKnown RBP9.35□□□□□ -0.91
CCDC40-212ENST00000574799 PKLRP30613 574 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 KCNC1P48547 511 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 PIK3CGP48736 1102 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 CDC42EP1Q00587 391 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 SMARCB1Q12824 385 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 KIAA0930Q6ICG6 404 aaPredicted RBP9.35□□□□□ -0.91
CCDC40-212ENST00000574799 CYP4Z1Q86W10 505 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 REM2Q8IYK8 340 aaPredicted RBP9.35□□□□□ -0.91
CCDC40-212ENST00000574799 CACTIN-AS1Q8N1I8 211 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 NPWQ8N729 165 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 ANKK1Q8NFD2 765 aa9.35□□□□□ -0.91
CCDC40-212ENST00000574799 IPCEF1Q8WWN9 437 aaPredicted RBP9.35□□□□□ -0.91
CCDC40-212ENST00000574799 SOCS4Q8WXH5 440 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms