RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ZNF891A8MT65 544 aaPredicted RBP14.48□□□□□ -0.09
VPS39-210ENST00000568357 ARHGEF33A8MVX0 844 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 H3BMH7 237 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 CPNE3O75131 537 aaKnown RBP14.48□□□□□ -0.09
VPS39-210ENST00000568357 ITGB2P05107 769 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 TCN2P20062 427 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 PDIA2Q13087 525 aaKnown RBP14.48□□□□□ -0.09
VPS39-210ENST00000568357 FASTKQ14296 549 aaKnown RBP14.48□□□□□ -0.09
VPS39-210ENST00000568357 FASTKD3Q14CZ7 662 aaKnown RBP14.48□□□□□ -0.09
VPS39-210ENST00000568357 SF1Q15637 639 aaKnown RBP14.48□□□□□ -0.09
VPS39-210ENST00000568357 DEFB110Q30KQ9 67 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 STEAP4Q687X5 459 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 LCN10Q6JVE6 187 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 ZNF517Q6ZMY9 492 aaPredicted RBP14.48□□□□□ -0.09
VPS39-210ENST00000568357 NEK10Q6ZWH5 1172 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 DNAJC22Q8N4W6 341 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 EXD3Q8N9H8 876 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 HMGCLL1Q8TB92 370 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 CD200R1Q8TD46 325 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 MAGEC3Q8TD91 643 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 CT55Q8WUE5 264 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 STARD8Q92502 1023 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 LRRC39Q96DD0 335 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 RUFY1Q96T51 708 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 SPRTNQ9H040 489 aaPredicted RBP14.48□□□□□ -0.09
VPS39-210ENST00000568357 DPH5Q9H2P9 285 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 FANCEQ9HB96 536 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 PPANQ9NQ55 473 aaKnown RBP14.48□□□□□ -0.09
VPS39-210ENST00000568357 MRFAP1Q9Y605 127 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 UNC79Q9P2D8 2635 aa14.48□□□□□ -0.09
VPS39-210ENST00000568357 A0A1W2PPV9 198 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 E7ESA3 106 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 KATNA1O75449 491 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 PRKAR1AP10644 381 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 MAGP20916 626 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 ITGA1P56199 1179 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 CBLBQ13191 982 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 CYP2A13Q16696 494 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 TTLL9Q3SXZ7 439 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 RBM20Q5T481 1227 aaKnown RBP14.47□□□□□ -0.09
VPS39-210ENST00000568357 ATP1A1-AS1Q5TC04 95 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 DUPD1Q68J44 220 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 FCRL6Q6DN72 434 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 MAATS1Q7Z4T9 603 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 CPNE9Q8IYJ1 553 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 FBXO36Q8NEA4 188 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 OR9A1PQ8NGU1 263 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 ASB11Q8WXH4 323 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 SLC22A18Q96BI1 424 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 PKP4Q99569 1192 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 RAB11FIP5Q9BXF6 653 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.47□□□□□ -0.09
VPS39-210ENST00000568357 BSNQ9UPA5 3926 aa14.47□□□□□ -0.09
VPS39-210ENST00000568357 E7EQ34 232 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 GFYI3L273 518 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 MYO1CO00159 1063 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 MEN1O00255 615 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 ZNF749O43361 778 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 VPS26AO75436 327 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 MPC1LP0DKB6 136 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 CYP2A7P20853 494 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 MCM3P25205 808 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 PSMB5P28074 263 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 OAS2P29728 719 aaKnown RBP14.46□□□□□ -0.09
VPS39-210ENST00000568357 RORAP35398 523 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 GRIA3P42263 894 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 PGGT1BP53609 377 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 CDKN2DP55273 166 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 YBX1P67809 324 aaKnown RBP14.46□□□□□ -0.09
VPS39-210ENST00000568357 DNASE1L3Q13609 305 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 FRG1Q14331 258 aaKnown RBP14.46□□□□□ -0.09
VPS39-210ENST00000568357 TRADDQ15628 312 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 C16orf46Q6P387 395 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 FIGLAQ6QHK4 219 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 KIAA0408Q6ZU52 694 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 ZNF572Q7Z3I7 529 aaPredicted RBP14.46□□□□□ -0.09
VPS39-210ENST00000568357 PIWIL4Q7Z3Z4 852 aaKnown RBP14.46□□□□□ -0.09
VPS39-210ENST00000568357 GALNT7Q86SF2 657 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 DSELQ8IZU8 1212 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 BBOF1Q8ND07 529 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 OR2A1Q8NGT9 310 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 MR1Q95460 341 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 CLIP3Q96DZ5 547 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 C16orf45Q96MC5 204 aaPredicted RBP14.46□□□□□ -0.09
VPS39-210ENST00000568357 LRFN5Q96NI6 719 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 CHST8Q9H2A9 424 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 ACTR5Q9H9F9 607 aaPredicted RBP14.46□□□□□ -0.09
VPS39-210ENST00000568357 PCMTD2Q9NV79 361 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 MOCS1Q9NZB8 636 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 GRHL1Q9NZI5 618 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 SPATA7Q9P0W8 599 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 WHRNQ9P202 907 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 KCND3Q9UK17 655 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 PCDHGA6Q9Y5G7 932 aa14.46□□□□□ -0.09
VPS39-210ENST00000568357 NBPF19A0A087WUL8 3843 aa14.46□□□□□ -0.1
VPS39-210ENST00000568357 C21orf140B9A014 251 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 CREG1O75629 220 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 OR2B3O76000 313 aa14.45□□□□□ -0.1
VPS39-210ENST00000568357 CATP04040 527 aaKnown RBP14.45□□□□□ -0.1
VPS39-210ENST00000568357 KLK3P07288 261 aaPredicted RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms