RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 SLC25A23Q9BV35 468 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 TSSK1BQ9BXA7 367 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 MFRPQ9BY79 579 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 FBXO6Q9NRD1 293 aaPredicted RBP17.03■□□□□ 0.32
HDDC3-205ENST00000559898 IRAK4Q9NWZ3 460 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.03■□□□□ 0.32
HDDC3-205ENST00000559898 ARHGEF33A8MVX0 844 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 MAP3K7O43318 606 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 CEACAM4O75871 244 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 S1PR4O95977 384 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 UMODP07911 640 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 CUL1Q13616 776 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 SF1Q15637 639 aaKnown RBP17.02■□□□□ 0.32
HDDC3-205ENST00000559898 CYP1B1Q16678 543 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 MRPL14Q6P1L8 145 aaKnown RBP17.02■□□□□ 0.32
HDDC3-205ENST00000559898 CASC4Q6P4E1 433 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 CCDC137Q6PK04 289 aaKnown RBP17.02■□□□□ 0.32
HDDC3-205ENST00000559898 TTLL10Q6ZVT0 673 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 COX15Q7KZN9 410 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 CILP2Q8IUL8 1156 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 MIB2Q96AX9 1013 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 PANX3Q96QZ0 392 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 SLC39A10Q9ULF5 831 aa17.02■□□□□ 0.32
HDDC3-205ENST00000559898 PTRH2Q9Y3E5 179 aaKnown RBP17.02■□□□□ 0.32
HDDC3-205ENST00000559898 SHANK1Q9Y566 2161 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 LOC105369274A0A096LPK9 316 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 LOC102723532A0A0G2JNH3 316 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 KIF5CO60282 957 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 MATN4O95460 622 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 AGXTP21549 392 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 ALAS2P22557 587 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 UQCRFS1P47985 274 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 SNRPNP63162 240 aaKnown RBP17.01■□□□□ 0.31
HDDC3-205ENST00000559898 DCDP81605 110 aaKnown RBP17.01■□□□□ 0.31
HDDC3-205ENST00000559898 MPP1Q00013 466 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 CDK16Q00536 496 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 DHX34Q14147 1143 aaKnown RBP17.01■□□□□ 0.31
HDDC3-205ENST00000559898 NKAIN1Q4KMZ8 207 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 NEPROQ6NW34 567 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 SUSD1Q6UWL2 747 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 SHISA6Q6ZSJ9 500 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 PPP1R32Q7Z5V6 425 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 MRGPREQ86SM8 312 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 LRRC6Q86X45 466 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 OR4N4Q8N0Y3 316 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 AMER2Q8N7J2 671 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 PPFIBP2Q8ND30 876 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 OR2A1Q8NGT9 310 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 SIGLEC10Q96LC7 697 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 OSBPL9Q96SU4 736 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 ACAT2Q9BWD1 397 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 SLC6A20Q9NP91 592 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 TRMT1Q9NXH9 659 aaKnown RBP17.01■□□□□ 0.31
HDDC3-205ENST00000559898 IFT80Q9P2H3 777 aaPredicted RBP17.01■□□□□ 0.31
HDDC3-205ENST00000559898 JRKLQ9Y4A0 524 aa17.01■□□□□ 0.31
HDDC3-205ENST00000559898 HECTD1Q9ULT8 2610 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 MDC1Q14676 2089 aaKnown RBP17■□□□□ 0.31
HDDC3-205ENST00000559898 USP27XA6NNY8 438 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 C9J4A7 227 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 HBQ1P09105 142 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 PKMP14618 531 aaKnown RBP17■□□□□ 0.31
HDDC3-205ENST00000559898 CHRM3P20309 590 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 OR1D4P47884 311 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 CD97P48960 835 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 CLCN7P51798 805 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 PGDP52209 483 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 KLHL38Q2WGJ6 581 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 PAPD7Q5XG87 772 aaKnown RBP17■□□□□ 0.31
HDDC3-205ENST00000559898 ZNF470Q6ECI4 717 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 MRNIPQ6NTE8 343 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 TLDC1Q6P9B6 456 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 SHISA5Q8N114 240 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 NAT8LQ8N9F0 302 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 Q8NA96 180 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 SEC14L1Q92503 715 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 RAD51AP1Q96B01 352 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 PBKQ96KB5 322 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 DPH2Q9BQC3 489 aaPredicted RBP17■□□□□ 0.31
HDDC3-205ENST00000559898 HOMER3Q9NSC5 361 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 NDOR1Q9UHB4 597 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 PCDHGA9Q9Y5G4 932 aaKnown RBP17■□□□□ 0.31
HDDC3-205ENST00000559898 AP1M2Q9Y6Q5 423 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 HEATR5BQ9P2D3 2071 aa17■□□□□ 0.31
HDDC3-205ENST00000559898 IGKV1-8A0A0C4DH67 115 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 A0A0J9YVX5 310 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 F8W8V4 182 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 RPN2P04844 631 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 OGNP20774 298 aaKnown RBP16.99■□□□□ 0.31
HDDC3-205ENST00000559898 SLC1A2P43004 574 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 MAGEA3P43357 314 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 PGGT1BP53609 377 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 VSX2P58304 361 aaPredicted RBP16.99■□□□□ 0.31
HDDC3-205ENST00000559898 MSS51Q4VC12 460 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 SDCCAG8Q86SQ7 713 aaPredicted RBP16.99■□□□□ 0.31
HDDC3-205ENST00000559898 RBMXL3Q8N7X1 1067 aaKnown RBP16.99■□□□□ 0.31
HDDC3-205ENST00000559898 OR2L3Q8NG85 312 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 PROKR1Q8TCW9 393 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 PWWP2AQ96N64 755 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 ZNF285Q96NJ3 590 aa16.99■□□□□ 0.31
HDDC3-205ENST00000559898 PKP4Q99569 1192 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms