RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 AGTRAPQ6RW13 159 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 RBM44Q6ZP01 1051 aaKnown RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 SH2D5Q6ZV89 423 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 EXOC3L1Q86VI1 746 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 ZNF761Q86XN6 746 aaPredicted RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 SLC22A9Q8IVM8 553 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 SFTPA2Q8IWL1 248 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 HOMEZQ8IX15 550 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 CACTIN-AS1Q8N1I8 211 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 PLD6Q8N2A8 252 aaKnown RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 FBXO39Q8N4B4 442 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 SPATA6LQ8N4H0 392 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 BANPQ8N9N5 519 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 PDPRQ8NCN5 879 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 DLG3Q92796 817 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 PTERQ96BW5 349 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 TMEM74Q96NL1 305 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 GPR78Q96P69 363 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 ATOH8Q96SQ7 321 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 UNKQ9C0B0 810 aaKnown RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 SYNDIG1Q9H7V2 258 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 KCNK9Q9NPC2 374 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 CCDC177Q9NQR7 707 aaPredicted RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 WWOXQ9NZC7 414 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 STOX2Q9P2F5 926 aaPredicted RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 CPSF2Q9P2I0 782 aaKnown RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 ICKQ9UPZ9 632 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 PLLPQ9Y342 182 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 DNAH14Q0VDD8 3507 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 LAMA1P25391 3075 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 SPTBP11277 2137 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ACACBO00763 2458 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 PRAMEF33A0A0G2JMD5 474 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 STX16-NPEPL1H3BU86 382 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 STX16O14662 325 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 TOX3O15405 576 aaPredicted RBP8.93□□□□□ -0.98
LDLR-210ENST00000559340 STK16O75716 305 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ZWINTO95229 277 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 KCNK5O95279 499 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 SLC16A8O95907 504 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 FTH1P19P0C7X4 201 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 MYL2P10916 166 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 CDH3P22223 829 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ATP5F1P24539 256 aaPredicted RBP8.93□□□□□ -0.98
LDLR-210ENST00000559340 CD1CP29017 333 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 IMPA1P29218 277 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 CMPK1P30085 196 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 GGT5P36269 586 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 CAPZBP47756 277 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ARL4DP49703 201 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 SLC18A1P54219 525 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 PRKAA2P54646 552 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 SIM1P81133 766 aaPredicted RBP8.93□□□□□ -0.98
LDLR-210ENST00000559340 NAE1Q13564 534 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 TSTA3Q13630 321 aaPredicted RBP8.93□□□□□ -0.98
LDLR-210ENST00000559340 GRB7Q14451 532 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 SF1Q15637 639 aaKnown RBP8.93□□□□□ -0.98
LDLR-210ENST00000559340 PPP1R3AQ16821 1122 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ST3GAL2Q16842 350 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 SLC5A12Q1EHB4 618 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 IRGCQ6NXR0 463 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 CYB5D1Q6P9G0 228 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 LCTLQ6UWM7 567 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 USP53Q70EK8 1073 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 KMT5CQ86Y97 462 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ADGRF3Q8IZF5 1079 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 TBC1D19Q8N5T2 526 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 OR4D9Q8NGE8 314 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 OR56A3Q8NH54 315 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ZNF480Q8WV37 535 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 EXT2Q93063 718 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 RHBDF1Q96CC6 855 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ATP6V1G3Q96LB4 118 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 SH3GL2Q99962 352 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 STRADBQ9C0K7 418 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 XKR8Q9H6D3 395 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 C1GALT1Q9NS00 363 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ZNF358Q9NW07 568 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 NKIRAS1Q9NYS0 192 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ACTR10Q9NZ32 417 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 TMEM216Q9P0N5 145 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 XPR1Q9UBH6 696 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 PTBP2Q9UKA9 531 aaKnown RBP8.93□□□□□ -0.98
LDLR-210ENST00000559340 PLAGL1Q9UM63 463 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 DYRK1BQ9Y463 629 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 ANGPTL3Q9Y5C1 460 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 KCNE2Q9Y6J6 123 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 SPTBN2O15020 2390 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 EPG5Q9HCE0 2579 aa8.93□□□□□ -0.98
LDLR-210ENST00000559340 WDR87Q6ZQQ6 2873 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 TLCD2A6NGC4 264 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 NCF1BA6NI72 391 aaPredicted RBP8.92□□□□□ -0.98
LDLR-210ENST00000559340 NCF1CA8MVU1 366 aaPredicted RBP8.92□□□□□ -0.98
LDLR-210ENST00000559340 E7ENX8 843 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 AGPSO00116 658 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 UBXN8O00124 270 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 BTN3A3O00478 584 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 NTN3O00634 580 aaPredicted RBP8.92□□□□□ -0.98
LDLR-210ENST00000559340 CLGNO14967 610 aa8.92□□□□□ -0.98
LDLR-210ENST00000559340 CAPN5O15484 640 aaPredicted RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms