RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 HERC3Q15034 1050 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 TEAD2Q15562 447 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 KRTAP27-1Q3LI81 207 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 LCE1FQ5T754 118 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 C11orf63Q6NUN7 778 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 SLC30A6Q6NXT4 461 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 KRT74Q7RTS7 529 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 IQCHQ86VS3 1027 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 KIRREL3Q8IZU9 778 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 EID3Q8N140 333 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 LSMEM1Q8N8F7 131 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 BMPERQ8N8U9 685 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 THAP8Q8NA92 274 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 PIGBQ92521 554 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 SUSD6Q92537 303 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 MOB3AQ96BX8 217 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 URM1Q9BTM9 101 aaKnown RBP4.02□□□□□ -1.77
SCFD1-221ENST00000556534 OR2B2Q9GZK3 357 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 CPVLQ9H3G5 476 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 Q9H8V8 135 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 ERVMER34-1Q9H9K5 563 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 FAM207AQ9NSI2 230 aaPredicted RBP4.02□□□□□ -1.77
SCFD1-221ENST00000556534 RNF186Q9NXI6 227 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 BARHL2Q9NY43 387 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 NKIRAS2Q9NYR9 191 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 RASAL2Q9UJF2 1139 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 GRID1Q9ULK0 1009 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 RNF150Q9ULK6 438 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 MSGN1A6NI15 193 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 C2orf81A6NN90 581 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 TIMM44O43615 452 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 RNF224P0DH78 156 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 CD22P20273 847 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 CPT2P23786 658 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 PCGF2P35227 344 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 LHX1P48742 406 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 VEGFCP49767 419 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 BMXP51813 675 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 KYNUQ16719 465 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 MFSD4BQ5TF39 518 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 ZNF497Q6ZNH5 498 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 MAML2Q8IZL2 1156 aaPredicted RBP4.01□□□□□ -1.77
SCFD1-221ENST00000556534 DCLK2Q8N568 766 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 TDRD5Q8NAT2 981 aaKnown RBP4.01□□□□□ -1.77
SCFD1-221ENST00000556534 OR5AP2Q8NGF4 316 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 HCAR2Q8TDS4 363 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 MIS12Q9H081 205 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 ATP13A3Q9H7F0 1226 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 PLCXD1Q9NUJ7 323 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 CLIC5Q9NZA1 410 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 KLHL8Q9P2G9 620 aaPredicted RBP4.01□□□□□ -1.77
SCFD1-221ENST00000556534 WDR35Q9P2L0 1181 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 TTLL3Q9Y4R7 772 aa4.01□□□□□ -1.77
SCFD1-221ENST00000556534 A0A1W2PPK0 400 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 ZNF500O60304 480 aaPredicted RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 CELF2O95319 508 aaKnown RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 C22orf31O95567 290 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 DNTTP04053 509 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 ATP5BP06576 529 aaKnown RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 MYBL1P10243 752 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 HILS1P60008 231 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 HERV-K104P61576 105 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 SNRPD1P62314 119 aaKnown RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 GCNT1Q02742 428 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 AIMP1Q12904 312 aaKnown RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 CUL3Q13618 768 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 PDLIM3Q53GG5 364 aaPredicted RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 XKR6Q5GH73 641 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 C20orf194Q5TEA3 1177 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 RPUSD3Q6P087 351 aaKnown RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 CCDC89Q8N998 374 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 MRGPRDQ8TDS7 321 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 SECISBP2LQ93073 1101 aaKnown RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 LRRC3BQ96PB8 259 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 CPNE1Q99829 537 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 OPRPNQ99935 248 aaPredicted RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 PIGQQ9BRB3 760 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 EPHA6Q9UF33 1036 aa4□□□□□ -1.77
SCFD1-221ENST00000556534 CPSF3Q9UKF6 684 aaKnown RBP4□□□□□ -1.77
SCFD1-221ENST00000556534 FIBPO43427 364 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 DDHD2O94830 711 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 ACSL3O95573 720 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 SERPINB2P05120 415 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 CSN3P07498 182 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 HSP90AA1P07900 732 aaKnown RBP3.99□□□□□ -1.77
SCFD1-221ENST00000556534 CLK1P49759 484 aaKnown RBP3.99□□□□□ -1.77
SCFD1-221ENST00000556534 ASCL1P50553 236 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 ACSM1Q08AH1 577 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 HNRNPDQ14103 355 aaKnown RBP3.99□□□□□ -1.77
SCFD1-221ENST00000556534 RASA2Q15283 850 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 MCMDC2Q4G0Z9 681 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 ARMC4Q5T2S8 1044 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 LACC1Q8IV20 430 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 LSMEM2Q8N112 164 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 OR10Q1Q8NGQ4 319 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 ZNF653Q96CK0 615 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 THOC1Q96FV9 657 aaKnown RBP3.99□□□□□ -1.77
SCFD1-221ENST00000556534 CFAP57Q96MR6 1250 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 SERINC2Q96SA4 455 aa3.99□□□□□ -1.77
SCFD1-221ENST00000556534 FEVQ99581 238 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms