RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	GTPBP2	Q9BX10	602 aa	Known RBP	4.07	□□□□□ -1.76
USP44-208	ENST00000552440	TSPYL1	Q9H0U9	437 aa		4.07	□□□□□ -1.76
USP44-208	ENST00000552440	PPIL3	Q9H2H8	161 aa	Known RBP	4.07	□□□□□ -1.76
USP44-208	ENST00000552440	TOR3A	Q9H497	397 aa		4.07	□□□□□ -1.76
USP44-208	ENST00000552440	FN3KRP	Q9HA64	309 aa		4.07	□□□□□ -1.76
USP44-208	ENST00000552440	ROPN1	Q9HAT0	212 aa	Predicted RBP	4.07	□□□□□ -1.76
USP44-208	ENST00000552440	MAGEF1	Q9HAY2	307 aa		4.07	□□□□□ -1.76
USP44-208	ENST00000552440	EQTN	Q9NQ60	294 aa		4.07	□□□□□ -1.76
USP44-208	ENST00000552440	EHD3	Q9NZN3	535 aa		4.07	□□□□□ -1.76
USP44-208	ENST00000552440	COPG2	Q9UBF2	871 aa		4.07	□□□□□ -1.76
USP44-208	ENST00000552440	MGAT4C	Q9UBM8	478 aa		4.07	□□□□□ -1.76
USP44-208	ENST00000552440	FZD1	Q9UP38	647 aa		4.07	□□□□□ -1.76
USP44-208	ENST00000552440	FOXA2	Q9Y261	457 aa	Predicted RBP	4.07	□□□□□ -1.76
USP44-208	ENST00000552440	TMEM184B	Q9Y519	407 aa	Predicted RBP	4.07	□□□□□ -1.76
USP44-208	ENST00000552440	ASTN2	O75129	1339 aa	Predicted RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	BTBD17	A6NE02	478 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	C4orf47	A7E2U8	309 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	BECN2	A8MW95	431 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	PPM1D	O15297	605 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	ARHGEF9	O43307	516 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	AKR7A2	O43488	359 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	ATP9A	O75110	1047 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	TRIM3	O75382	744 aa	Predicted RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	CS	O75390	466 aa	Known RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	VPS26A	O75436	327 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	WBP4	O75554	376 aa	Known RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	HIST1H2AB	P04908	130 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	CRYGC	P07315	174 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	PABPC4L	P0CB38	370 aa	Known RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	SLC2A4	P14672	509 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	HIST1H2AD	P20671	130 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	FBL	P22087	321 aa	Known RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	ANXA13	P27216	316 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	PSMB4	P28070	264 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	CD1B	P29016	333 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	PRDX6	P30041	224 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	CA8	P35219	290 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	SYK	P43405	635 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	GPR143	P51810	404 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	HNRNPK	P61978	463 aa	Known RBP eCLIP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	NUCB2	P80303	420 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	MRPS15	P82914	257 aa	Known RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	HSPB3	Q12988	150 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	MAB21L1	Q13394	359 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	STXBP2	Q15833	593 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	RPE65	Q16518	533 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	KLHL40	Q2TBA0	621 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	CCNYL2	Q5T2Q4	361 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	SFRP4	Q6FHJ7	346 aa	Predicted RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	FAM198B	Q6UWH4	519 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	HIST3H2A	Q7L7L0	130 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	TPRA1	Q86W33	373 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	MISP	Q8IVT2	679 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	KLHDC8A	Q8IYD2	350 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	ZDHHC23	Q8IYP9	409 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	FAM109A	Q8N4B1	249 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF276	Q8N554	614 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	SNX19	Q92543	992 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	ZBED3	Q96IU2	234 aa	Predicted RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	FAM71F1	Q96KD3	344 aa	Predicted RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	C12orf66	Q96MD2	445 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	BTBD9	Q96Q07	612 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	PANX2	Q96RD6	677 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	BBS4	Q96RK4	519 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	SMC6	Q96SB8	1091 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	C11orf70	Q9BRQ4	267 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	ELOVL1	Q9BW60	279 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	CDCP1	Q9H5V8	836 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	TMEM231	Q9H6L2	316 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	CYP3A43	Q9HB55	503 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	NUDT15	Q9NV35	164 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	KLHL28	Q9NXS3	571 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	ARPP21	Q9UBL0	812 aa	Predicted RBP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	SERTAD3	Q9UJW9	196 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	PACSIN3	Q9UKS6	424 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	NIP7	Q9Y221	180 aa	Known RBP eCLIP	4.06	□□□□□ -1.76
USP44-208	ENST00000552440	PADI2	Q9Y2J8	665 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	FAM96B	Q9Y3D0	163 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	CEP164	Q9UPV0	1460 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440	KIF27	Q86VH2	1401 aa		4.06	□□□□□ -1.76
USP44-208	ENST00000552440		A0A1B0GTW7	788 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ANKRD61	A6NGH8	418 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ZAR1L	A6NP61	321 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	LEFTY2	O00292	366 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CLDN4	O14493	209 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF264	O43296	627 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PPIP5K2	O43314	1243 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	STRN	O43815	780 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PLA2G4B	P0C869	781 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CYP19A1	P11511	503 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	F3	P13726	295 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF18	P17022	549 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TNNI3	P19429	210 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ITGAX	P20702	1163 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	BMP5	P22003	454 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF75D	P51815	510 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CRYBB1	P53674	252 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	HSD11B2	P80365	405 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	EGR4	Q05215	589 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PRKAA1	Q13131	559 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 150.5 ms