RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PIM3Q86V86 326 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 LILRA2Q8N149 483 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 OR6J1Q8NGC5 347 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 STAG3L4Q8TBR4 150 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 RAET1EQ8TD07 263 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 TMBIM1Q969X1 311 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 TRIM43Q96BQ3 446 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 NARS2Q96I59 477 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 NSMCE3Q96MG7 304 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 OR52E6Q96RD3 313 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 HAPLN3Q96S86 360 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SPRTNQ9H040 489 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PDGFCQ9NRA1 345 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 GDAP2Q9NXN4 497 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 STMN3Q9NZ72 180 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 CLEC1BQ9P126 229 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 TUBGCP4Q9UGJ1 667 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 CLEC4AQ9UMR7 237 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 CARD8Q9Y2G2 431 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 MAGED1Q9Y5V3 778 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 A0A1W2PQ72 361 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 TYW5A2RUC4 315 aaKnown RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 IQCF5A8MTL0 148 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 KPNA5O15131 536 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PCDHGA12O60330 932 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 AP2A1O95782 977 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 JUNP05412 331 aaKnown RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 TSPAN19P0C672 248 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 IGFBP5P24593 272 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 SLC26A3P40879 764 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PITX1P78337 314 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 NAB1Q13506 487 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 GRIK4Q16099 956 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PABPC1LQ4VXU2 614 aaKnown RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 CMPK2Q5EBM0 449 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 CELF3Q5SZQ8 465 aaKnown RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 SYPL2Q5VXT5 272 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 ZNF534Q76KX8 674 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 LUZP2Q86TE4 346 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 SMG8Q8ND04 991 aaKnown RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 VPS37AQ8NEZ2 397 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 OR8H1Q8NGG4 311 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 SLC47A1Q96FL8 570 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 ITCHQ96J02 903 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 HSFY1Q96LI6 401 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 FCRL3Q96P31 734 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 SEMA3CQ99985 751 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 NKIRAS2Q9NYR9 191 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PDP1Q9P0J1 537 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 TBC1D14Q9P2M4 693 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 UXTQ9UBK9 157 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 ATP6V1HQ9UI12 483 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PCDHGA9Q9Y5G4 932 aaKnown RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PCDHGA8Q9Y5G5 932 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PCDHGA7Q9Y5G6 932 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PCDHGA6Q9Y5G7 932 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PCDHGA3Q9Y5H0 932 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PCDHGA2Q9Y5H1 932 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 CEPT1Q9Y6K0 416 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 DENND4CQ5VZ89 1909 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 A0A087X1B8 175 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 LRRC14BA6NHZ5 514 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 EFCAB9A8MZ26 197 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 TMX2-CTNND1H3BSU7 103 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 BTN3A3O00478 584 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 ZNF197O14709 1029 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 DENRO43583 198 aaKnown RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 RGS10O43665 173 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 TLR5O60602 858 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 SMIM18P0DKX4 95 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 IDO1P14902 403 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PTPN3P26045 913 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PCSK1P29120 753 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PRDX6P30041 224 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 OR1E1P30953 314 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 OPRL1P41146 370 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 SLC1A2P43004 574 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 MAP2K4P45985 399 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 RENBPP51606 427 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 POLR2JP52435 117 aaKnown RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 SLC10A2Q12908 348 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 NPTX1Q15818 432 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PRAMEF19Q5SWL8 479 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 FDX2Q6P4F2 183 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 LCLAT1Q6UWP7 414 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 ABHD15Q6UXT9 468 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 ADCK2Q7Z695 626 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 ADGRG6Q86SQ4 1221 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 GPR65Q8IYL9 337 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 KCT2Q8NC54 265 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 TRPV3Q8NET8 790 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 LRRC58Q96CX6 371 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 RNFT2Q96EX2 444 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 QKIQ96PU8 341 aaKnown RBP eCLIP5.36□□□□□ -1.55
LIMA1-203ENST00000547825 PCYT2Q99447 389 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 CLPBQ9H078 707 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 C11orf49Q9H6J7 331 aa5.36□□□□□ -1.55
LIMA1-203ENST00000547825 ZNF696Q9H7X3 374 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms