RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TMEM245Q9H330 911 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 SLAMF8Q9P0V8 285 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 KLHL3Q9UH77 587 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 EFCAB10A6NFE3 127 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 WNT9AO14904 365 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 RGS10O43665 173 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 MYL12AP19105 171 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 FBXW4P57775 412 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 XKR4Q5GH76 650 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 AGTRAPQ6RW13 159 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 CLEC14AQ86T13 490 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 CMTR2Q8IYT2 770 aaKnown RBP15.29■□□□□ 0.04
CUX1-211ENST00000546411 SLC22A15Q8IZD6 547 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 SLC34A3Q8N130 599 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 EZH1Q92800 747 aaPredicted RBP15.29■□□□□ 0.04
CUX1-211ENST00000546411 CLIP3Q96DZ5 547 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 TOR3AQ9H497 397 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 CCM2LQ9NUG4 571 aaPredicted RBP15.29■□□□□ 0.04
CUX1-211ENST00000546411 SPACA6W5XKT8 324 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 PRNPP04156 253 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 IMPDH2P12268 514 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 SYN1P17600 705 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 VN1R5Q7Z5H4 357 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 AMER2Q8N7J2 671 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 FLCNQ8NFG4 579 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 OR14C36Q8NHC7 312 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 MCFD2Q8NI22 146 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 ZNF296Q8WUU4 475 aaPredicted RBP15.28■□□□□ 0.04
CUX1-211ENST00000546411 GATA6Q92908 595 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 SMOXQ9NWM0 555 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 CMTM6Q9NX76 183 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 EHD3Q9NZN3 535 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 CAPN15O75808 1086 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 ENO2P09104 434 aaPredicted RBP15.28■□□□□ 0.04
CUX1-211ENST00000546411 BPIP17213 487 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 PRPS1L1P21108 318 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 APLP1P51693 650 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 ZDHHC20Q5W0Z9 365 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 CES4AQ5XG92 561 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 FAM91A1Q658Y4 838 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 NADSYN1Q6IA69 706 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.28■□□□□ 0.04
CUX1-211ENST00000546411 ZFP28Q8NHY6 868 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 MGME1Q9BQP7 344 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 MAGEE1Q9HCI5 957 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 IL26Q9NPH9 171 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 A6NHS1 94 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 MMP20O60882 483 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 LEFTY1O75610 366 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 ALDOCP09972 364 aaKnown RBP15.28■□□□□ 0.04
CUX1-211ENST00000546411 BCKDHAP12694 445 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 ITGA2P17301 1181 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 OXTRP30559 389 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 ARSFP54793 590 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 SRSF11Q05519 484 aaKnown RBP15.28■□□□□ 0.04
CUX1-211ENST00000546411 SH2D5Q6ZV89 423 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 BEND5Q7L4P6 421 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 C16orf62Q7Z3J2 963 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 CROCCP3Q8IVE0 287 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 CD200R1Q8TD46 325 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 TMIGD2Q96BF3 282 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 CHCHD6Q9BRQ6 235 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 FZD4Q9ULV1 537 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 PLAGL1Q9UM63 463 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 TSPAN19P0C672 248 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 ARNTP27540 789 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 ADRA1AP35348 466 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 TGM3Q08188 693 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 UAP1L1Q3KQV9 507 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 THOC6Q86W42 341 aaKnown RBP15.28■□□□□ 0.04
CUX1-211ENST00000546411 TMEM25Q86YD3 366 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 YIPF4Q9BSR8 244 aa15.28■□□□□ 0.04
CUX1-211ENST00000546411 TRIM43BA6NCK2 446 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 SNTNA6NMZ2 147 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 XPNPEP2O43895 674 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 ADAMTS4O75173 837 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 KLK1P06870 262 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 CCL5P13501 91 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 ATF6P18850 670 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 GCNT6Q5T4J0 391 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 FAM180BQ6P0A1 224 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 FAM43BQ6ZT52 329 aaPredicted RBP15.27■□□□□ 0.04
CUX1-211ENST00000546411 MFSD6LQ8IWD5 586 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 GPR65Q8IYL9 337 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 HSPBAP1Q96EW2 488 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 AIF1LQ9BQI0 150 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 CLN6Q9NWW5 311 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 MTRRQ9UBK8 725 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 ZNF451Q9Y4E5 1061 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 TTC3P53804 2025 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 GSAPA4D1B5 854 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 ATXN1LP0C7T5 689 aaKnown RBP15.27■□□□□ 0.04
CUX1-211ENST00000546411 PPIBP23284 216 aaKnown RBP15.27■□□□□ 0.04
CUX1-211ENST00000546411 PSMD7P51665 324 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 EPHX4Q8IUS5 362 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 HTRA1Q92743 480 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 KAT2AQ92830 837 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 PEX13Q92968 403 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 C12orf43Q96C57 262 aaKnown RBP15.27■□□□□ 0.04
CUX1-211ENST00000546411 SLC39A13Q96H72 371 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms