RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SLC22A15Q8IZD6 547 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 KRTCAP2Q8N6L1 136 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ZNF366Q8N895 744 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 SKA2Q8WVK7 121 aaPredicted RBP13.4□□□□□ -0.26
RTN3-210ENST00000540798 SELENOMQ8WWX9 145 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 SMG7Q92540 1137 aaKnown RBP13.4□□□□□ -0.26
RTN3-210ENST00000540798 PYCR2Q96C36 320 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 BIRC7Q96CA5 298 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 AP2M1Q96CW1 435 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 CCM2Q9BSQ5 444 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 C8orf4Q9NR00 106 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 SLC25A37Q9NYZ2 338 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ANAPC2Q9UJX6 822 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 AURKCQ9UQB9 309 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ITM2BQ9Y287 266 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 DLGAP4Q9Y2H0 992 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ACOX3O15254 700 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 DFNA5O60443 496 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ATG13O75143 517 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 CKMT2P17540 419 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 MAPK9P45984 424 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 POLE2P56282 527 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 MTPNP58546 118 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ST8SIA6P61647 398 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 RPS14P62263 151 aaKnown RBP13.4□□□□□ -0.26
RTN3-210ENST00000540798 TMEM115Q12893 351 aaPredicted RBP13.4□□□□□ -0.26
RTN3-210ENST00000540798 E2F2Q14209 437 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 BCL7AQ4VC05 210 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 SLC44A4Q53GD3 710 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 FAM78AQ5JUQ0 283 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 LRIF1Q5T3J3 769 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 IFNEQ86WN2 208 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 TBC1D21Q8IYX1 336 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 DTWD1Q8N5C7 304 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 AADATQ8N5Z0 425 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 VN1R2Q8NFZ6 395 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 BPIFB1Q8TDL5 484 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 PPWD1Q96BP3 646 aaKnown RBP13.4□□□□□ -0.26
RTN3-210ENST00000540798 TESCQ96BS2 214 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 MTFMTQ96DP5 389 aaKnown RBP13.4□□□□□ -0.26
RTN3-210ENST00000540798 CNBD2Q96M20 576 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ASB16Q96NS5 453 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ZNF639Q9UID6 485 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 AK5Q9Y6K8 562 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 KRT87PA6NCN2 255 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 LILRB5O75023 590 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 CD22P20273 847 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 SLC6A11P48066 632 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 METAP1P53582 386 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 HNRNPA1L2Q32P51 320 aaKnown RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 RUNDC3AQ59EK9 446 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 XKR5Q6UX68 686 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 ZBTB49Q6ZSB9 765 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 NPAS3Q8IXF0 933 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 FAM9CQ8IZT9 166 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 OR52E4Q8NGH9 312 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 WDR20Q8TBZ3 569 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 ARRDC3Q96B67 414 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 ANKRD60Q9BZ19 345 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 ELOVL6Q9H5J4 265 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 GORASP2Q9H8Y8 452 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 SERHLQ9NQF3 203 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 GULP1Q9UBP9 304 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 MYO7AQ13402 2215 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 PABPN1LA6NDY0 278 aaKnown RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 OTOL1A6NHN0 477 aaPredicted RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 TNFAIP8O95379 198 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 NFATC1O95644 943 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 C7P10643 843 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 AMD1P17707 334 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 PHC1P78364 1004 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 ACOX1Q15067 660 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 MAPKAPK3Q16644 382 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 POM121L1PQ3SYA9 428 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 LIN52Q52LA3 116 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 FRG2Q64ET8 278 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 RALGPS2Q86X27 583 aaPredicted RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 FBXO15Q8NCQ5 510 aaPredicted RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 CCDC138Q96M89 665 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 FRG2BQ96QU4 278 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 PAIP1Q9H074 479 aaKnown RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 EPB41L1Q9H4G0 881 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 PADI4Q9UM07 663 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 EDDM13A0A1B0GTR0 161 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 FAM58BPP0C7Q3 252 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 CDH1P12830 882 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 SDC1P18827 310 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 FUT4P22083 530 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 CSTF3Q12996 717 aaKnown RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 APOFQ13790 326 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 EIF4HQ15056 248 aaKnown RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 GLYATQ6IB77 296 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 ZNF548Q8NEK5 533 aaPredicted RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 ATL1Q8WXF7 558 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 SAMD11Q96NU1 681 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 GBP5Q96PP8 586 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 TMEM245Q9H330 911 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 STOX2Q9P2F5 926 aaPredicted RBP13.39□□□□□ -0.27
RTN3-210ENST00000540798 AP3M1Q9Y2T2 418 aa13.39□□□□□ -0.27
RTN3-210ENST00000540798 ARHGAP10A1A4S6 786 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms