RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CPNE1Q99829 537 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 HGH1Q9BTY7 390 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 CDC42EP4Q9H3Q1 356 aaKnown RBP9.82□□□□□ -0.84
VPS28-204ENST00000526054 RHOJQ9H4E5 214 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 SMYD2Q9NRG4 433 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 TAS2R13Q9NYV9 303 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 NINJ2Q9NZG7 142 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 POLG2Q9UHN1 485 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 KCND3Q9UK17 655 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 POLHQ9Y253 713 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 TP53TG5Q9Y2B4 290 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 PSAT1Q9Y617 370 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 KCNMB2Q9Y691 235 aa9.82□□□□□ -0.84
VPS28-204ENST00000526054 FAM95CA0A1B0GW59 222 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 MKRN2OSH3BPM6 223 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 EIF3FO00303 357 aaPredicted RBP9.81□□□□□ -0.84
VPS28-204ENST00000526054 CTIFO43310 598 aaKnown RBP9.81□□□□□ -0.84
VPS28-204ENST00000526054 KATNA1O75449 491 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 MT-ND3P03897 115 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 CCNYL3P0C7X3 344 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 CBSLP0DN79 551 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 FGF5P12034 268 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 CD9P21926 228 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 TNFRSF8P28908 595 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 CBSP35520 551 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 RGS4P49798 205 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 SLC12A2P55011 1212 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 SRSF1Q07955 248 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS28-204ENST00000526054 KLRB1Q12918 225 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 ABRQ12979 859 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 PDAP1Q13442 181 aaKnown RBP9.81□□□□□ -0.84
VPS28-204ENST00000526054 TUBB3Q13509 450 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 GBX1Q14549 363 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 IGFBP7Q16270 282 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 KYNUQ16719 465 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 KBTBD12Q3ZCT8 623 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS28-204ENST00000526054 RBM20Q5T481 1227 aaKnown RBP9.81□□□□□ -0.84
VPS28-204ENST00000526054 HECTD2Q5U5R9 776 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 ARMC6Q6NXE6 501 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 TTC23LQ6PF05 361 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 NEK10Q6ZWH5 1172 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 ZC3HC1Q86WB0 502 aaKnown RBP9.81□□□□□ -0.84
VPS28-204ENST00000526054 OOSP2Q86WS3 158 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 VRK3Q8IV63 474 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 DCUN1D3Q8IWE4 304 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 PPM1NQ8N819 430 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 PHC3Q8NDX5 983 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 OR5AR1Q8NGP9 310 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 CFAP61Q8NHU2 1237 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 GIMAP7Q8NHV1 300 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 CD200R1Q8TD46 325 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 MAGEC3Q8TD91 643 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 LCN9Q8WX39 176 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS28-204ENST00000526054 KLHL6Q8WZ60 621 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 VPS39Q96JC1 886 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 CYTH2Q99418 400 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 RAB33BQ9H082 229 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 PDE7BQ9NP56 450 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 ANKMY1Q9P2S6 941 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 EPHA6Q9UF33 1036 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 TDRKHQ9Y2W6 561 aaKnown RBP9.81□□□□□ -0.84
VPS28-204ENST00000526054 MED16Q9Y2X0 877 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 VWA7Q9Y334 891 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 DHRS7Q9Y394 339 aa9.81□□□□□ -0.84
VPS28-204ENST00000526054 UQCRHLA0A096LP55 91 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 CDC14CA4D256 554 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 OR5K3A6NET4 321 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 CXorf49A8MYA2 514 aaPredicted RBP9.8□□□□□ -0.84
VPS28-204ENST00000526054 MATN2O00339 956 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 CREG1O75629 220 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 RFPL1O75677 317 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 TIAF1O95411 115 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 ACSL3O95573 720 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 CATP04040 527 aaKnown RBP9.8□□□□□ -0.84
VPS28-204ENST00000526054 UQCRHP07919 91 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 MPC1LP0DKB6 136 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 NELFEP18615 380 aaKnown RBP9.8□□□□□ -0.84
VPS28-204ENST00000526054 NR1D1P20393 614 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 FDXRP22570 491 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 MCM3P25205 808 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 SHMT2P34897 504 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 SPRP35270 261 aaPredicted RBP9.8□□□□□ -0.84
VPS28-204ENST00000526054 CCNFP41002 786 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 PPP1CAP62136 330 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 PRKAA1Q13131 559 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 PRKG2Q13237 762 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 DNASE1L3Q13609 305 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 UBAP2LQ14157 1087 aaKnown RBP9.8□□□□□ -0.84
VPS28-204ENST00000526054 ERCC6LQ2NKX8 1250 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 KLHL38Q2WGJ6 581 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 ACSBG2Q5FVE4 666 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 GRTP1Q5TC63 336 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 TRMT10CQ7L0Y3 403 aaKnown RBP9.8□□□□□ -0.84
VPS28-204ENST00000526054 CPNE9Q8IYJ1 553 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 RAB42Q8N4Z0 105 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 OR52E1Q8NGJ3 308 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 CT55Q8WUE5 264 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 TSPAN17Q96FV3 270 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms