RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 LCA5Q86VQ0 697 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 FAM129CQ86XR2 697 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 CEP97Q8IW35 865 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 ZBTB2Q8N680 514 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 ANKRD42Q8N9B4 389 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 RASGEF1AQ8N9B8 481 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 SIDT2Q8NBJ9 832 aaKnown RBP11.82□□□□□ -0.52
PTPRF-208ENST00000437607 CD200R1Q8TD46 325 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 NAT14Q8WUY8 206 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 SLC45A3Q96JT2 553 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 CTRCQ99895 268 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 DPYSL5Q9BPU6 564 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 CNOT10Q9H9A5 744 aaKnown RBP11.82□□□□□ -0.52
PTPRF-208ENST00000437607 SYTL2Q9HCH5 934 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-208ENST00000437607 ATXN10Q9UBB4 475 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 TUBD1Q9UJT1 453 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 MID2Q9UJV3 735 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 ACOT9Q9Y305 439 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 SPTBN1Q01082 2364 aaKnown RBP11.82□□□□□ -0.52
PTPRF-208ENST00000437607 TMEM120BA0PK00 339 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 CLEC18AA5D8T8 446 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 ZNF891A8MT65 544 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-208ENST00000437607 A8MU76 341 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 KPNA5O15131 536 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 TM9SF1O15321 606 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 PRPF4O43172 522 aaKnown RBP eCLIP11.81□□□□□ -0.527e-7■■■□□ 16.8
PTPRF-208ENST00000437607 ZWINTO95229 277 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 APOA4P06727 396 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 LTA4HP09960 611 aaKnown RBP11.81□□□□□ -0.52
PTPRF-208ENST00000437607 ZNF8P17098 575 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-208ENST00000437607 SKIV2L2P42285 1042 aaKnown RBP11.81□□□□□ -0.52
PTPRF-208ENST00000437607 CCR10P46092 362 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 CCT5P48643 541 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 IRF9Q00978 393 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 MC2RQ01718 297 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 BIRC2Q13490 618 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 CSHL1Q14406 222 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 IGFBP7Q16270 282 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 FAM83EQ2M2I3 478 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 PLA2G4EQ3MJ16 856 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 AGAP9Q5VTM2 703 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 LRRC8EQ6NSJ5 796 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 TMEM220Q6QAJ8 160 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 CLEC18BQ6UXF7 455 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 GALNT13Q8IUC8 556 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 CPNE9Q8IYJ1 553 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 MYO1HQ8N1T3 1032 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 NKAPQ8N5F7 415 aaKnown RBP11.81□□□□□ -0.52
PTPRF-208ENST00000437607 BANPQ8N9N5 519 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 CCDC63Q8NA47 563 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 CLEC18CQ8NCF0 446 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 GIMAP7Q8NHV1 300 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 HM13Q8TCT9 377 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 KCTD4Q8WVF5 259 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 ELMO1Q92556 727 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 LINGO1Q96FE5 620 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 SCYL1Q96KG9 808 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 ASPSCR1Q9BZE9 553 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 RMI1Q9H9A7 625 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 APMAPQ9HDC9 416 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 FAM8A1Q9UBU6 413 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 MED16Q9Y2X0 877 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 PRKAB1Q9Y478 270 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 SHANK1Q9Y566 2161 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 CCDC88CQ9P219 2028 aa11.81□□□□□ -0.52
PTPRF-208ENST00000437607 SPTBP11277 2137 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 A6NCN8 305 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 NUAK1O60285 661 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 CCDC166P0CW27 439 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 COL6A2P12110 1019 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 ENO3P13929 434 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-208ENST00000437607 VCLP18206 1134 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 SLC26A3P40879 764 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 CASRP41180 1078 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 CLCN7P51798 805 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 RAB15P59190 212 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 IL2P60568 153 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 FOXK1P85037 733 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 INSCQ1MX18 579 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 SNAP47Q5SQN1 464 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 WDR74Q6RFH5 385 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-208ENST00000437607 NLGN4XQ8N0W4 816 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 BEND7Q8N7W2 519 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-208ENST00000437607 NLGN4YQ8NFZ3 816 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-208ENST00000437607 INPP5DQ92835 1189 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 CATSPER2Q96P56 530 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 SLC38A3Q99624 504 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 CCM2Q9BSQ5 444 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 ZNF71Q9NQZ8 489 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-208ENST00000437607 KLHL42Q9P2K6 505 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 ANKMY1Q9P2S6 941 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 TBC1D29Q9UFV1 150 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 DCDC2Q9UHG0 476 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 TSR3Q9UJK0 312 aaKnown RBP11.8□□□□□ -0.52
PTPRF-208ENST00000437607 DHRS7Q9Y394 339 aa11.8□□□□□ -0.52
PTPRF-208ENST00000437607 TMEM184BQ9Y519 407 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-208ENST00000437607 KLHL33A6NCF5 533 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 PABPN1LA6NDY0 278 aaKnown RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 EIF3FO00303 357 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms