RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ABHD6Q9BV23 337 aa3.99□□□□□ -1.77
HMGB3-203ENST00000430118 IQCGQ9H095 443 aaKnown RBP3.99□□□□□ -1.77
HMGB3-203ENST00000430118 CHMP1AQ9HD42 196 aaPredicted RBP3.99□□□□□ -1.77
HMGB3-203ENST00000430118 MMP25Q9NPA2 562 aa3.99□□□□□ -1.77
HMGB3-203ENST00000430118 EQTNQ9NQ60 294 aa3.99□□□□□ -1.77
HMGB3-203ENST00000430118 UTP6Q9NYH9 597 aaKnown RBP3.99□□□□□ -1.77
HMGB3-203ENST00000430118 IL36RNQ9UBH0 155 aa3.99□□□□□ -1.77
HMGB3-203ENST00000430118 DNAJB9Q9UBS3 223 aa3.99□□□□□ -1.77
HMGB3-203ENST00000430118 RCOR1Q9UKL0 485 aa3.99□□□□□ -1.77
HMGB3-203ENST00000430118 KLHL20Q9Y2M5 609 aa3.99□□□□□ -1.77
HMGB3-203ENST00000430118 COL4A6Q14031 1691 aa3.99□□□□□ -1.77
HMGB3-203ENST00000430118 KMT2EQ8IZD2 1858 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 NAV1Q8NEY1 1877 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 CDK5RAP2Q96SN8 1893 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 DCHS1Q96JQ0 3298 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 MED19A0JLT2 244 aaPredicted RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 OR6C76A6NM76 312 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 ENO4A6NNW6 628 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 H0YAE9 185 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 PES1O00541 588 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 SLC30A4O14863 429 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 TSPAN1O60635 241 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 RAMP2O60895 175 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 ATG13O75143 517 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 CREG1O75629 220 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 IDH1O75874 414 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 ADRB1P08588 477 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 DANCRP0C864 163 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 CHMLP26374 656 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 HNRNPH1P31943 449 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 HSPA4P34932 840 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 RDXP35241 583 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 RFX5P48382 616 aaPredicted RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 VCPP55072 806 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 ZP1P60852 638 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 TIMM10P62072 90 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 GAD2Q05329 585 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 RBPJQ06330 500 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 SRSF1Q07955 248 aaKnown RBP eCLIP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 FOXM1Q08050 763 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 HSPB3Q12988 150 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 ZRSR1Q15695 479 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 INPP5JQ15735 1006 aaPredicted RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 SMN1Q16637 294 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 SHROOM1Q2M3G4 852 aaPredicted RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 ZNF674Q2M3X9 581 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 SMU1Q2TAY7 513 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 MYLK3Q32MK0 819 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 MMEL1Q495T6 779 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 FAM98BQ52LJ0 330 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 EPC2Q52LR7 807 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 ZRANB3Q5FWF4 1079 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 SFMBT2Q5VUG0 894 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 ZDHHC20Q5W0Z9 365 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 KRT39Q6A163 491 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 KCTD18Q6PI47 426 aaPredicted RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 PARM1Q6UWI2 310 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 SYT10Q6XYQ8 523 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 SHFQ7M4L6 423 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 CCDC190Q86UF4 302 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 UBALD2Q8IYN6 164 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 CARNMT1Q8N4J0 409 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 GPT2Q8TD30 523 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 TAS1R2Q8TE23 839 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 C17orf50Q8WW18 174 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 TCP11Q8WWU5 503 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 ERGIC1Q969X5 290 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 CCDC47Q96A33 483 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 SLC22A12Q96S37 553 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 POLR3CQ9BUI4 534 aaPredicted RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 CRNKL1Q9BZJ0 848 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 AAMDCQ9H7C9 122 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 CNOT10Q9H9A5 744 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 IL1RAPL2Q9NP60 686 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 FZD3Q9NPG1 666 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 TRPV5Q9NQA5 729 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 TAS2R14Q9NYV8 317 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 PCDHA12Q9UN75 941 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 MYRFQ9Y2G1 1151 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 RRP15Q9Y3B9 282 aaKnown RBP3.98□□□□□ -1.77
HMGB3-203ENST00000430118 PAM16Q9Y3D7 125 aa3.98□□□□□ -1.77
HMGB3-203ENST00000430118 MYO9BQ13459 2157 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 OOEPA6NGQ2 149 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ERICH4A6NGS2 130 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 KIF2AO00139 706 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 PPP6CO00743 305 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 KCNN4O15554 427 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SPINT2O43291 252 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SPRY1O43609 319 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SLCO2B1O94956 709 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SOX30O94993 753 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 PENKP01210 267 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 IGLV2-14P01704 120 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ZFYP08048 801 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 CYC1P08574 325 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 GCFC2P16383 781 aaKnown RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ADRA2CP18825 462 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 UGT1A1P22309 533 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 CDC25CP30307 473 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 CTNNB1P35222 781 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms