RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 MOCOSQ96EN8 888 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 NSUN5Q96P11 429 aaKnown RBP13.8□□□□□ -0.2
SF3B1-204ENST00000414963 IL17FQ96PD4 163 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 ZNF382Q96SR6 550 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 SORT1Q99523 831 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 MIPEPQ99797 713 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.8□□□□□ -0.2
SF3B1-204ENST00000414963 C20orf27Q9GZN8 174 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 STN1Q9H668 368 aaKnown RBP13.8□□□□□ -0.2
SF3B1-204ENST00000414963 EML4Q9HC35 981 aaKnown RBP13.8□□□□□ -0.2
SF3B1-204ENST00000414963 DNAAF2Q9NVR5 837 aaKnown RBP13.8□□□□□ -0.2
SF3B1-204ENST00000414963 GPRC5BQ9NZH0 403 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 GMEB2Q9UKD1 530 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 SLC22A14Q9Y267 594 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 STK38LQ9Y2H1 464 aa13.8□□□□□ -0.2
SF3B1-204ENST00000414963 A0A1W2PPV9 198 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 GMNCA6NCL1 334 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 LILRA5A6NI73 299 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 UBFD1O14562 309 aaKnown RBP13.79□□□□□ -0.2
SF3B1-204ENST00000414963 PPM1DO15297 605 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 CCNT2O60583 730 aaKnown RBP13.79□□□□□ -0.2
SF3B1-204ENST00000414963 KATNA1O75449 491 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 WDR47O94967 919 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 FGF4P08620 206 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 NPPBP16860 134 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 EPORP19235 508 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 CDH13P55290 713 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 PKNOX1P55347 436 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 MAZP56270 477 aaKnown RBP13.79□□□□□ -0.2
SF3B1-204ENST00000414963 TBPL1P62380 186 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 FASTKQ14296 549 aaKnown RBP13.79□□□□□ -0.2
SF3B1-204ENST00000414963 CCDC6Q16204 474 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 ZNF438Q7Z4V0 828 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 GATAD2AQ86YP4 633 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 KIRREL3Q8IZU9 778 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 MINDY1Q8N5J2 469 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 KYQ8NBH2 561 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 PYCR2Q96C36 320 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 CHMP6Q96FZ7 201 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 OR4K3Q96R72 315 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 HAUS8Q9BT25 410 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 NTMT1Q9BV86 223 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 ILKAPQ9H0C8 392 aaPredicted RBP13.79□□□□□ -0.2
SF3B1-204ENST00000414963 SRMSQ9H3Y6 488 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 SMOC1Q9H4F8 434 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 ZNF395Q9H8N7 513 aaPredicted RBP13.79□□□□□ -0.2
SF3B1-204ENST00000414963 IPPKQ9H8X2 491 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 SLCO1B3Q9NPD5 702 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 CCDC177Q9NQR7 707 aaPredicted RBP13.79□□□□□ -0.2
SF3B1-204ENST00000414963 ACSS2Q9NR19 701 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 RAP2CQ9Y3L5 183 aa13.79□□□□□ -0.2
SF3B1-204ENST00000414963 ARHGEF17Q96PE2 2063 aaPredicted RBP13.78□□□□□ -0.2
SF3B1-204ENST00000414963 LNP1A1A4G5 178 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 TRIM38O00635 465 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 OR7A17O14581 309 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 NUDT21O43809 227 aaKnown RBP13.78□□□□□ -0.2
SF3B1-204ENST00000414963 EDF1O60869 148 aaKnown RBP13.78□□□□□ -0.2
SF3B1-204ENST00000414963 LYPLA1O75608 230 aaPredicted RBP13.78□□□□□ -0.2
SF3B1-204ENST00000414963 HSPA4LO95757 839 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 OTCP00480 354 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 CHRNGP07510 517 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 GLB1P16278 677 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 CASP2P42575 452 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 SH3BP2P78314 561 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 CDC16Q13042 620 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 PRKAA1Q13131 559 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 E2F2Q14209 437 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 NR1D2Q14995 579 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 SUZ12Q15022 739 aaKnown RBP13.78□□□□□ -0.2
SF3B1-204ENST00000414963 TCEAL6Q6IPX3 200 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 LCTLQ6UWM7 567 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 RPS27LQ71UM5 84 aaKnown RBP13.78□□□□□ -0.2
SF3B1-204ENST00000414963 HOMEZQ8IX15 550 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 SLC35F3Q8IY50 421 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 ADGRF3Q8IZF5 1079 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 PPFIBP2Q8ND30 876 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 OR4E2Q8NGC2 313 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 OR6C4Q8NGE1 309 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 OR2I1PQ8NGU4 316 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 TRPC4APQ8TEL6 797 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 AGAP11Q8TF27 550 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 TCEAL3Q969E4 200 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 MED8Q96G25 268 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 NRTNQ99748 197 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 GTPBP2Q9BX10 602 aaKnown RBP13.78□□□□□ -0.2
SF3B1-204ENST00000414963 XKR8Q9H6D3 395 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 NOL11Q9H8H0 719 aaKnown RBP13.78□□□□□ -0.2
SF3B1-204ENST00000414963 SEMA4BQ9NPR2 832 aaPredicted RBP13.78□□□□□ -0.2
SF3B1-204ENST00000414963 ANGPTL3Q9Y5C1 460 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 ENTPD2Q9Y5L3 495 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 KCNE2Q9Y6J6 123 aa13.78□□□□□ -0.2
SF3B1-204ENST00000414963 DLL1O00548 723 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 PPP6CO00743 305 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 TDRD6O60522 2096 aaKnown RBP13.77□□□□□ -0.21
SF3B1-204ENST00000414963 UGDHO60701 494 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 WFS1O76024 890 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 FKBP9O95302 570 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 TGDSO95455 350 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 ESRRBO95718 433 aa13.77□□□□□ -0.21
SF3B1-204ENST00000414963 LMNAP02545 664 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms