RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NFATC2Q13469 925 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 GTF2H3Q13889 308 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 ARHGEF7Q14155 803 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 SYT6Q5T7P8 510 aaPredicted RBP12.39□□□□□ -0.43
SHMT1-205ENST00000395684 CCSAPQ6IQ19 270 aaPredicted RBP12.39□□□□□ -0.43
SHMT1-205ENST00000395684 CAPN13Q6MZZ7 669 aaPredicted RBP12.39□□□□□ -0.43
SHMT1-205ENST00000395684 CCDC81Q6ZN84 652 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 CHST9Q7L1S5 443 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 RBFAQ8N0V3 343 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 CADM3Q8N126 398 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 ZBTB2Q8N680 514 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 MYOCQ99972 504 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 TTLL2Q9BWV7 592 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 NECTIN3Q9NQS3 549 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 GPRC5BQ9NZH0 403 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 TRIM43BA6NCK2 446 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 ZNF840PA6NDX5 716 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 K7ERQ8 282 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 ADAM12O43184 909 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 STK16O75716 305 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 TGM1P22735 817 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 GATMP50440 423 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 RHOAP61586 193 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 FPGSQ05932 587 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 ABHD18Q0P651 414 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 DNASE1L3Q13609 305 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 CLCA4Q14CN2 919 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 INAQ16352 499 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 ZXDCQ2QGD7 858 aaPredicted RBP12.38□□□□□ -0.43
SHMT1-205ENST00000395684 PGS1Q32NB8 556 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 ADGRF1Q5T601 910 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 KDM4DQ6B0I6 523 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 DOK6Q6PKX4 331 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 TRAF7Q6Q0C0 670 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 SNX20Q7Z614 316 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 GALNT10Q86SR1 603 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 P2RY8Q86VZ1 359 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 ADGRG2Q8IZP9 1017 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 TMEM132CQ8N3T6 1108 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 DYNC2LI1Q8TCX1 351 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 UBTD2Q8WUN7 234 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 S100ZQ8WXG8 99 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 UBE2FQ969M7 185 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 EGLN2Q96KS0 407 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 RNF38Q9H0F5 515 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 CWH43Q9H720 699 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 FBXO8Q9NRD0 319 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 LATS2Q9NRM7 1088 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 ATAD3AQ9NVI7 634 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 WNT9AO14904 365 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 LRATO95237 230 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 PARNO95453 639 aaKnown RBP12.38□□□□□ -0.43
SHMT1-205ENST00000395684 CLDN9O95484 217 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 MT-ND2P03891 347 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 HOXA9P31269 272 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 TGFBR1P36897 503 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 EIF2B2P49770 351 aaKnown RBP12.38□□□□□ -0.43
SHMT1-205ENST00000395684 NKX3-2P78367 333 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 OR2T5Q6IEZ7 315 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 PRSS55Q6UWB4 352 aaPredicted RBP12.38□□□□□ -0.43
SHMT1-205ENST00000395684 LINC00299Q6ZSB3 139 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 TMEM173Q86WV6 379 aaPredicted RBP12.38□□□□□ -0.43
SHMT1-205ENST00000395684 SETD9Q8NE22 299 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 OR6Q1Q8NGQ2 317 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 OR2T29Q8NH02 315 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 BCL7BQ9BQE9 202 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 GABARAPL1Q9H0R8 117 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 ZFYVE1Q9HBF4 777 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 IL1RAPQ9NPH3 570 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 GABRQQ9UN88 632 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 TPRKBQ9Y3C4 175 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 HTTP42858 3142 aa12.38□□□□□ -0.43
SHMT1-205ENST00000395684 MYO1GB0I1T2 1018 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 hCG_2039718K7EN88 272 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 CCNDBP1O95273 360 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 PGLSO95336 258 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 CLDN7O95471 211 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 FADS2O95864 444 aaKnown RBP12.37□□□□□ -0.43
SHMT1-205ENST00000395684 ACRV1P26436 265 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 PSMB9P28065 219 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 KEAP1Q14145 624 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 DGUOKQ16854 277 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 HECTD3Q5T447 861 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 ARMC12Q5T9G4 340 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 CST9Q5W186 159 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 ZNF540Q8NDQ6 660 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 DNAJB8Q8NHS0 232 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 RPL3LQ92901 407 aaKnown RBP12.37□□□□□ -0.43
SHMT1-205ENST00000395684 TBC1D20Q96BZ9 403 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 CDK5RAP1Q96SZ6 601 aaKnown RBP12.37□□□□□ -0.43
SHMT1-205ENST00000395684 TM6SF2Q9BZW4 377 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 ARHGAP39Q9C0H5 1083 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 AASDHPPTQ9NRN7 309 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 SH3BP1Q9Y3L3 701 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 GMPPBQ9Y5P6 360 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 A8MX80 341 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 SDC1P18827 310 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 GKP32189 559 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 CXCR4P61073 352 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 VLDLRP98155 873 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms